libbio-primerdesigner-perl_0.07-3_all.deb


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Description

libbio-primerdesigner-perl - Perl module to design PCR primers using primer3 and epcr

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libbio-primerdesigner-perl
Package version 0.07
Package release 3
Package architecture all
Package type deb
Installed size 109 B
Download size 44.76 KB
Official Mirror ftp.br.debian.org
Bio::PrimerDesigner provides a low-level interface to the primer3 and epcr
binary executables and supplies methods to return the results. In addition to
accessing local installations of primer3 or e-PCR, it also offers the ability
to accessing the primer3 binary via a remote server.

Alternatives

Package Version Architecture Repository
libbio-primerdesigner-perl_0.07-3_all.deb 0.07 all Debian Main
libbio-primerdesigner-perl - - -

Requires

Name Value
libclass-base-perl -
libreadonly-perl -
libwww-perl -
ncbi-epcr -
perl -
primer3 -

Download

Type URL
Binary Package libbio-primerdesigner-perl_0.07-3_all.deb
Source Package libbio-primerdesigner-perl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbio-primerdesigner-perl deb package:
    # sudo apt-get install libbio-primerdesigner-perl

Files

Path
/usr/bin/primer_designer
/usr/share/doc/libbio-primerdesigner-perl/changelog.Debian.gz
/usr/share/doc/libbio-primerdesigner-perl/copyright
/usr/share/man/man1/primer_designer.1p.gz
/usr/share/man/man3/Bio::PrimerDesigner.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::Remote.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::Result.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::Tables.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::epcr.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::ispcr.3pm.gz
/usr/share/man/man3/Bio::PrimerDesigner::primer3.3pm.gz
/usr/share/perl5/Bio/PrimerDesigner.pm
/usr/share/perl5/Bio/PrimerDesigner/Config.pm
/usr/share/perl5/Bio/PrimerDesigner/Remote.pm
/usr/share/perl5/Bio/PrimerDesigner/Result.pm
/usr/share/perl5/Bio/PrimerDesigner/Tables.pm
/usr/share/perl5/Bio/PrimerDesigner/epcr.pm
/usr/share/perl5/Bio/PrimerDesigner/ispcr.pm
/usr/share/perl5/Bio/PrimerDesigner/primer3.pm

Changelog

2013-09-03 - Damyan Ivanov <dmn@debian.org>
libbio-primerdesigner-perl (0.07-3) unstable; urgency=low
* Team upload
* add patch fixing hash manipulation inside each.
Fixes test failures with perl 5.18 (Closes: #711426)
2013-08-07 - gregor herrmann <gregoa@debian.org>
libbio-primerdesigner-perl (0.07-2) unstable; urgency=low
[ Ryan Niebur ]
* Email change: Jonathan Yu -> jawnsy@cpan.org
* Email change: Ryan Niebur -> ryan@debian.org
[ gregor herrmann ]
* debian/control: Changed: (build-)depend on perl instead of perl-
modules.
* Re-wrap long description.
* Don't install empty Bio::PrimerDesigner::Config.3pm manpage; thanks
lintian.
* Remove alternative (build) dependencies that are already satisfied
in oldstable.
[ Ansgar Burchardt ]
* debian/control: Convert Vcs-* fields to Git.
[ gregor herrmann ]
* debian/control: update {versioned,alternative} (build) dependencies.
[ Salvatore Bonaccorso ]
* Change search.cpan.org based URIs to metacpan.org based URIs
[ gregor herrmann ]
* Switch to "3.0 (quilt)" source format.
* Add a patch to use Module::Build's args() instead of Getopt::Long.
(Closes: #718120)
* debian/copyright: switch formatting to Copyright-Format 1.0.
* Update debian/rules and remove debian/clean.
* Bump debhelper compatibility level to 8.
* Declare compliance with Debian Policy 3.9.4.
2009-08-04 - Charles Plessy <plessy@debian.org>
libbio-primerdesigner-perl (0.07-1) unstable; urgency=low
* New upstream release (no changes on Linux systems).
[ Jonathan Yu ]
* Standards-Version 3.8.2
* Added myself to Uploaders.
* Do real clean to clean things up (get rid of the generated Makefile)
[ Nathan Handler ]
* debian/watch: Update to ignore development releases.
[ Charles Plessy ]
* Refreshed and prettified debian/copyright.
* Restored the skipping of the remote.t test in debian/rules after it
was factorised using Debhelper’s ”dh” command.
[ Ryan Niebur ]
* Use --buildsystem=perl_build in debian/rules.
* Test if Build is present before calling dh_auto_clean in debian/rules.
(Temporary workaround for debhelper bug #539848.)
* Add myself to Uploaders
2009-05-02 - gregor herrmann <gregoa@debian.org>
libbio-primerdesigner-perl (0.06-1) unstable; urgency=low
[ Charles Plessy ]
* debian/copyright: show the way to GPLv3, not GPLv2.
[ gregor herrmann ]
* debian/rules: skip test t/remote.t which tries to connect to somewhere and
causes a FBTFS; thanks to Daniel Schepler for the bug report
(closes: #526566)
* New upstream release.
* debian/copyright: update years of upstream copyright.
* Set Standards-Version to 3.8.1 (no changes).
* Add /me to Uploaders.
* debian/control: make the short description a noun phrase.
2009-03-08 - Charles Plessy <plessy@debian.org>
libbio-primerdesigner-perl (0.05-1) unstable; urgency=low
* New upstream release clarifying license.
* debian/control:
- Build-depend on libtest-pod-perl for automatic tests at build time.
2009-01-22 - Charles Plessy <plessy@debian.org>
libbio-primerdesigner-perl (0.04-1) unstable; urgency=low
* Initial Release (Closes: #512718).

See Also

Package Description
libbio-samtools-perl_1.39-1+b1_amd64.deb Perl interface to SamTools library for DNA sequencing
libbio-scf-perl_1.03-2+b1_amd64.deb Perl extension for reading and writing SCF sequence files
libbio2jack0-dev_0.9-2.1_amd64.deb oss/alsa to jack porting lib - development files
libbio2jack0_0.9-2.1_amd64.deb oss/alsa to jack porting lib - runtime files
libbiococoa-dev_2.2.2-2+b1_amd64.deb Bioinformatics framework for GNUstep and Cocoa (development files)
libbiococoa2_2.2.2-2+b1_amd64.deb Bioinformatics framework for GNUstep and Cocoa (library files)
libbiojava-java-demos_1.7.1-5_all.deb Example programs for BioJava
libbiojava-java-doc_1.7.1-5_all.deb [Biology] Documentation for BioJava
libbiojava-java_1.7.1-5_all.deb Java API to biological data and applications (default version)
libbiojava1.7-java_1.7.1-5_all.deb Java API to biological data and applications (version 1.7)
libbiojava3-java-doc_3.1.0+dfsg-2_all.deb [Biology] Documentation for BioJava
libbiojava3-java_3.1.0+dfsg-2_all.deb Java API to biological data and applications (default version)
libbiojava3.0-java_3.1.0+dfsg-2_all.deb Java API to biological data and applications (version 3)
libbiosig-dev_1.3.0-2+b2_amd64.deb I/O library for biomedical data - development files
libbiosig1_1.3.0-2+b2_amd64.deb I/O library for biomedical data - dynamic library
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