libbio-perl-run-perl_1.6.9-2_all.deb


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Description

libbio-perl-run-perl - BioPerl wrappers: modules

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libbio-perl-run-perl
Package version 1.6.9
Package release 2
Package architecture all
Package type deb
Installed size 2.22 KB
Download size 735.46 KB
Official Mirror ftp.br.debian.org
Contains modules that provide a Perl interface to various bioinformatics
applications to allow them to be used with common BioPerl objects.

Alternatives

Package Version Architecture Repository
libbio-perl-run-perl_1.6.9-2_all.deb 1.6.9 all Debian Main
libbio-perl-run-perl - - -

Requires

Name Value
libbio-perl-perl -
perl -

Replaces

Name Value
bioperl-run << 1.6.9

Download

Type URL
Binary Package libbio-perl-run-perl_1.6.9-2_all.deb
Source Package bioperl-run

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbio-perl-run-perl deb package:
    # sudo apt-get install libbio-perl-run-perl

Files

Path
/usr/share/doc/libbio-perl-run-perl/changelog.Debian.gz
/usr/share/doc/libbio-perl-run-perl/changelog.gz
/usr/share/doc/libbio-perl-run-perl/copyright
/usr/share/man/man3/Bio::DB::ESoap.3pm.gz
/usr/share/man/man3/Bio::DB::ESoap::WSDL.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::DocSumAdaptor.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::seq.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::species.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::GQueryAdaptor.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::LinkAdaptor.3pm.gz
/usr/share/man/man3/Bio::DB::SoapEUtilities::Result.3pm.gz
/usr/share/man/man3/Bio::Factory::EMBOSS.3pm.gz
/usr/share/man/man3/Bio::Installer::Clustalw.3pm.gz
/usr/share/man/man3/Bio::Installer::EMBOSS.3pm.gz
/usr/share/man/man3/Bio::Installer::Generic.3pm.gz
/usr/share/man/man3/Bio::Installer::Hyphy.3pm.gz
/usr/share/man/man3/Bio::Installer::Muscle.3pm.gz
/usr/share/man/man3/Bio::Installer::PAML.3pm.gz
/usr/share/man/man3/Bio::Installer::Probcons.3pm.gz
/usr/share/man/man3/Bio::Installer::SLR.3pm.gz
/usr/share/man/man3/Bio::Installer::TCoffee.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Amap.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Clustalw.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::DBA.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Gmap.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Kalign.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Lagan.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::MAFFT.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Muscle.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Pal2Nal.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Probalign.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Probcons.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Proda.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::Sim4.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::StandAloneFasta.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Alignment::TCoffee.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Analysis.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Analysis::soap.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::AnalysisFactory.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::AnalysisFactory::soap.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::AssemblerBase.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::BEDTools.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::BEDTools::Config.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::BWA.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::BWA::Config.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::BlastPlus.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Bowtie.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Bowtie::Config.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Cap3.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Coil.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::EMBOSSApplication.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::ERPIN.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Ensembl.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Eponine.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::FootPrinter.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Genemark.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Genewise.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Genscan.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Glimmer.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Hmmer.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Infernal.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::MCS.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Maq.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Maq::Config.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Match.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Mdust.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Meme.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Minimo.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Newbler.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phrap.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Gerp.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Gumby.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::Base.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::FEL.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::Modeltest.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::REL.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Hyphy::SLAC.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::LVB.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Molphy::ProtML.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Njtree::Best.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Baseml.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Codeml.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Evolver.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Yn00.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phast::PhastCons.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phast::PhyloFit.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Base.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Consense.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawGram.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawTree.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Neighbor.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Phyml.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::QuickTree.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::SLR.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Phylo::Semphy.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Primate.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Primer3.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Prints.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Profile.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Promoterwise.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Pseudowise.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::RNAMotif.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::RepeatMasker.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Samtools.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Samtools::Config.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Seg.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Signalp.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Simprot.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::StandAloneBlastPlus.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::StandAloneBlastPlus::BlastMethods.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::TigrAssembler.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Tmhmm.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::TribeMCL.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::Vista.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::tRNAscanSE.3pm.gz
/usr/share/perl5/Bio/DB/ESoap.pm
/usr/share/perl5/Bio/DB/SoapEUtilities.pm
/usr/share/perl5/Bio/DB/ESoap/WSDL.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/FetchAdaptor.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/LinkAdaptor.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/Result.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm
/usr/share/perl5/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm
/usr/share/perl5/Bio/Factory/EMBOSS.pm
/usr/share/perl5/Bio/Installer/Clustalw.pm
/usr/share/perl5/Bio/Installer/EMBOSS.pm
/usr/share/perl5/Bio/Installer/Generic.pm
/usr/share/perl5/Bio/Installer/Hyphy.pm
/usr/share/perl5/Bio/Installer/Muscle.pm
/usr/share/perl5/Bio/Installer/PAML.pm
/usr/share/perl5/Bio/Installer/Probcons.pm
/usr/share/perl5/Bio/Installer/SLR.pm
/usr/share/perl5/Bio/Installer/TCoffee.pm
/usr/share/perl5/Bio/Tools/Run/Analysis.pm
/usr/share/perl5/Bio/Tools/Run/AnalysisFactory.pm
/usr/share/perl5/Bio/Tools/Run/AssemblerBase.pm
/usr/share/perl5/Bio/Tools/Run/BEDTools.pm
/usr/share/perl5/Bio/Tools/Run/BWA.pm
/usr/share/perl5/Bio/Tools/Run/BlastPlus.pm
/usr/share/perl5/Bio/Tools/Run/Bowtie.pm
/usr/share/perl5/Bio/Tools/Run/Cap3.pm
/usr/share/perl5/Bio/Tools/Run/Coil.pm
/usr/share/perl5/Bio/Tools/Run/EMBOSSApplication.pm
/usr/share/perl5/Bio/Tools/Run/EMBOSSacd.pm
/usr/share/perl5/Bio/Tools/Run/ERPIN.pm
/usr/share/perl5/Bio/Tools/Run/Ensembl.pm
/usr/share/perl5/Bio/Tools/Run/Eponine.pm
/usr/share/perl5/Bio/Tools/Run/FootPrinter.pm
/usr/share/perl5/Bio/Tools/Run/Genemark.pm
/usr/share/perl5/Bio/Tools/Run/Genewise.pm
/usr/share/perl5/Bio/Tools/Run/Genscan.pm
/usr/share/perl5/Bio/Tools/Run/Glimmer.pm
/usr/share/perl5/Bio/Tools/Run/Hmmer.pm
/usr/share/perl5/Bio/Tools/Run/Infernal.pm
/usr/share/perl5/Bio/Tools/Run/MCS.pm
/usr/share/perl5/Bio/Tools/Run/Maq.pm
/usr/share/perl5/Bio/Tools/Run/Match.pm
/usr/share/perl5/Bio/Tools/Run/Mdust.pm
/usr/share/perl5/Bio/Tools/Run/Meme.pm
/usr/share/perl5/Bio/Tools/Run/Minimo.pm
/usr/share/perl5/Bio/Tools/Run/Newbler.pm
/usr/share/perl5/Bio/Tools/Run/Phrap.pm
/usr/share/perl5/Bio/Tools/Run/Primate.pm
/usr/share/perl5/Bio/Tools/Run/Primer3.pm
/usr/share/perl5/Bio/Tools/Run/Prints.pm
/usr/share/perl5/Bio/Tools/Run/Profile.pm
/usr/share/perl5/Bio/Tools/Run/Promoterwise.pm
/usr/share/perl5/Bio/Tools/Run/Pseudowise.pm
/usr/share/perl5/Bio/Tools/Run/RNAMotif.pm
/usr/share/perl5/Bio/Tools/Run/RepeatMasker.pm
/usr/share/perl5/Bio/Tools/Run/Samtools.pm
/usr/share/perl5/Bio/Tools/Run/Seg.pm
/usr/share/perl5/Bio/Tools/Run/Signalp.pm
/usr/share/perl5/Bio/Tools/Run/Simprot.pm
/usr/share/perl5/Bio/Tools/Run/StandAloneBlastPlus.pm
/usr/share/perl5/Bio/Tools/Run/TigrAssembler.pm
/usr/share/perl5/Bio/Tools/Run/Tmhmm.pm
/usr/share/perl5/Bio/Tools/Run/TribeMCL.pm
/usr/share/perl5/Bio/Tools/Run/Vista.pm
/usr/share/perl5/Bio/Tools/Run/tRNAscanSE.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Amap.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Blat.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Clustalw.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/DBA.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Exonerate.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Gmap.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Kalign.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Lagan.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/MAFFT.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Muscle.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Pal2Nal.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Probalign.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Probcons.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Proda.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/Sim4.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/StandAloneFasta.pm
/usr/share/perl5/Bio/Tools/Run/Alignment/TCoffee.pm
/usr/share/perl5/Bio/Tools/Run/Analysis/soap.pm
/usr/share/perl5/Bio/Tools/Run/AnalysisFactory/soap.pm
/usr/share/perl5/Bio/Tools/Run/BEDTools/Config.pm
/usr/share/perl5/Bio/Tools/Run/BWA/Config.pm
/usr/share/perl5/Bio/Tools/Run/BlastPlus/Config.pm
/usr/share/perl5/Bio/Tools/Run/Bowtie/Config.pm
/usr/share/perl5/Bio/Tools/Run/Maq/Config.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Gerp.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Gumby.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/LVB.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/PhyloBase.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phyml.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/QuickTree.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/SLR.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Semphy.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/Base.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/REL.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Njtree/Best.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Baseml.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Codeml.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Evolver.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Yn00.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/Base.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/Consense.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
/usr/share/perl5/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
/usr/share/perl5/Bio/Tools/Run/Samtools/Config.pm
/usr/share/perl5/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm

Changelog

See bioperl-run_1.6.9-2_all.deb changelog.

See Also

Package Description
libbio-primerdesigner-perl_0.07-3_all.deb Perl module to design PCR primers using primer3 and epcr
libbio-samtools-perl_1.39-1+b1_amd64.deb Perl interface to SamTools library for DNA sequencing
libbio-scf-perl_1.03-2+b1_amd64.deb Perl extension for reading and writing SCF sequence files
libbio2jack0-dev_0.9-2.1_amd64.deb oss/alsa to jack porting lib - development files
libbio2jack0_0.9-2.1_amd64.deb oss/alsa to jack porting lib - runtime files
libbiococoa-dev_2.2.2-2+b1_amd64.deb Bioinformatics framework for GNUstep and Cocoa (development files)
libbiococoa2_2.2.2-2+b1_amd64.deb Bioinformatics framework for GNUstep and Cocoa (library files)
libbiojava-java-demos_1.7.1-5_all.deb Example programs for BioJava
libbiojava-java-doc_1.7.1-5_all.deb [Biology] Documentation for BioJava
libbiojava-java_1.7.1-5_all.deb Java API to biological data and applications (default version)
libbiojava1.7-java_1.7.1-5_all.deb Java API to biological data and applications (version 1.7)
libbiojava3-java-doc_3.1.0+dfsg-2_all.deb [Biology] Documentation for BioJava
libbiojava3-java_3.1.0+dfsg-2_all.deb Java API to biological data and applications (default version)
libbiojava3.0-java_3.1.0+dfsg-2_all.deb Java API to biological data and applications (version 3)
libbiosig-dev_1.3.0-2+b2_amd64.deb I/O library for biomedical data - development files
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