libbio-graphics-perl_2.39-2_all.deb


Advertisement

Description

libbio-graphics-perl - Generate GD images of Bio::Seq objects

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: libbio-graphics-perl
Package version: 2.39
Package release: 2
Package architecture: all
Package type: deb
Installed size: 1.65 KB
Download size: 591.45 KB
Official Mirror: ftp.br.debian.org
The Bio::Graphics::Panel class provides drawing and formatting services for any object that implements the Bio::SeqFeatureI interface, including Ace::Sequence::Feature, Das::Segment::Feature and Bio::DB::Graphics objects. It can be used to draw sequence annotations, physical (contig) maps, protein domains, or any other type of map in which a set of discrete ranges need to be laid out on the number line.

Alternatives

    Download

    Source package: libbio-graphics-perl

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install libbio-graphics-perl deb package:
      # sudo apt-get install libbio-graphics-perl

    Files

    • /usr/bin/contig_draw
    • /usr/bin/feature_draw
    • /usr/bin/frend
    • /usr/bin/glyph_help
    • /usr/bin/render_msa
    • /usr/bin/search_overview
    • /usr/share/doc/libbio-graphics-perl/README.gz
    • /usr/share/doc/libbio-graphics-perl/README.test
    • /usr/share/doc/libbio-graphics-perl/changelog.Debian.gz
    • /usr/share/doc/libbio-graphics-perl/changelog.gz
    • /usr/share/doc/libbio-graphics-perl/copyright
    • /usr/share/doc/libbio-graphics-perl/examples/feature_data.gff
    • /usr/share/doc/libbio-graphics-perl/examples/feature_data.txt
    • /usr/share/doc/libbio-graphics-perl/examples/testit.pl.gz
    • /usr/share/doc/libbio-graphics-perl/examples/testit2.pl
    • /usr/share/doc/libbio-graphics-perl/examples/testit3.pl.gz
    • /usr/share/man/man1/contig_draw.1p.gz
    • /usr/share/man/man1/feature_draw.1p.gz
    • /usr/share/man/man1/frend.1p.gz
    • /usr/share/man/man1/search_overview.1p.gz
    • /usr/share/man/man3/Bio::Graphics.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::ConfiguratorI.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::DrawTransmembrane.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Feature.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::FeatureBase.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::FeatureDir.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::FeatureFile.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::FeatureFile::Iterator.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::Factory.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::alignment.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::allele_tower.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::anchored_arrow.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::arrow.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::box.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::broken_line.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::cds.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::christmas_arrow.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::crossbox.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::dashed_line.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::decorated_gene.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::decorated_transcript.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::diamond.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::dna.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::dot.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::dumbbell.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::ellipse.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::ex.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::extending_arrow.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::fb_shmiggle.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::fixedwidth.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::flag.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::gene.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::generic.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::graded_segments.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::group.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::hat.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::heat_map.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::heat_map_ideogram.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::heterogeneous_segments.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::hidden.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::hybrid_plot.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::ideogram.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::image.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::lightning.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::line.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::merge_parts.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::merged_alignment.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::minmax.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::operon.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::oval.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::pairplot.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::pentagram.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::phylo_align.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::pinsertion.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::primers.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::processed_transcript.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::protein.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::ragged_ends.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::rainbow_gene.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::redgreen_box.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::redgreen_segment.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::repeating_shape.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::rndrect.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::ruler_arrow.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::saw_teeth.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::scale.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::segmented_keyglyph.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::segments.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::so_transcript.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::span.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::spectrogram.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::splice_site.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::stackedplot.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::ternary_plot.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::text_in_box.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::three_letters.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::tic_tac_toe.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::toomany.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::trace.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::track.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::transcript.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::transcript2.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::translation.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::triangle.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::two_bolts.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::vista_plot.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::wave.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::weighted_arrow.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::whiskerplot.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::wiggle_box.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::wiggle_density.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::wiggle_xyplot.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Glyph::xyplot.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Panel.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Pictogram.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::RendererI.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Util.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Wiggle.3pm.gz
    • /usr/share/man/man3/Bio::Graphics::Wiggle::Loader.3pm.gz
    • /usr/share/perl5/Bio/Graphics.pm
    • /usr/share/perl5/Bio/Graphics/ConfiguratorI.pm
    • /usr/share/perl5/Bio/Graphics/DrawTransmembrane.pm
    • /usr/share/perl5/Bio/Graphics/Feature.pm
    • /usr/share/perl5/Bio/Graphics/FeatureBase.pm
    • /usr/share/perl5/Bio/Graphics/FeatureDir.pm
    • /usr/share/perl5/Bio/Graphics/FeatureFile.pm
    • /usr/share/perl5/Bio/Graphics/GDWrapper.pm
    • /usr/share/perl5/Bio/Graphics/Glyph.pm
    • /usr/share/perl5/Bio/Graphics/Layout.pm
    • /usr/share/perl5/Bio/Graphics/Panel.pm
    • /usr/share/perl5/Bio/Graphics/Pictogram.pm
    • /usr/share/perl5/Bio/Graphics/RendererI.pm
    • /usr/share/perl5/Bio/Graphics/Util.pm
    • /usr/share/perl5/Bio/Graphics/Wiggle.pm
    • /usr/share/perl5/Bio/Graphics/FeatureFile/Iterator.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/Factory.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/alignment.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/allele_tower.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/anchored_arrow.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/arrow.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/box.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/broken_line.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/cds.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/christmas_arrow.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/cross.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/crossbox.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/dashed_line.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/decorated_gene.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/decorated_transcript.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/diamond.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/dna.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/dot.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/dumbbell.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/ellipse.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/ex.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/extending_arrow.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/fb_shmiggle.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/fixedwidth.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/flag.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/gene.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/generic.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/graded_segments.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/group.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/hat.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/heat_map.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/heat_map_ideogram.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/heterogeneous_segments.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/hidden.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/hybrid_plot.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/ideogram.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/image.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/lightning.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/line.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/merge_parts.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/merged_alignment.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/minmax.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/operon.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/oval.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/pairplot.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/pentagram.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/phylo_align.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/pinsertion.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/point_glyph.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/primers.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/processed_transcript.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/protein.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/ragged_ends.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/rainbow_gene.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/read_pair.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/redgreen_box.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/redgreen_segment.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/repeating_shape.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/rndrect.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/ruler_arrow.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/saw_teeth.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/scale.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/segmented_keyglyph.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/segments.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/smoothing.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/so_transcript.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/span.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/spectrogram.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/splice_site.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/stackedplot.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/ternary_plot.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/text_in_box.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/three_letters.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/tic_tac_toe.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/toomany.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/trace.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/track.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/transcript.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/transcript2.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/translation.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/triangle.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/two_bolts.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/vista_plot.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/wave.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/weighted_arrow.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/whiskerplot.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/wiggle_box.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/wiggle_data.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/wiggle_density.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/wiggle_whiskers.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/wiggle_xyplot.pm
    • /usr/share/perl5/Bio/Graphics/Glyph/xyplot.pm
    • /usr/share/perl5/Bio/Graphics/Wiggle/Loader.pm

    Changelog

    2014-11-09 - Andreas Tille <tille@debian.org> libbio-graphics-perl (2.39-2) unstable; urgency=medium * Build depends libgd-perl rather than the removed libgd-gd2-perl package Closes: #768760

    2014-08-08 - Andreas Tille <tille@debian.org> libbio-graphics-perl (2.39-1) unstable; urgency=medium * New upstream version (patch applied upstream) * cme fix dpkg-control * add libgd-svg-perl as additional Build-Depends-Indep to successfully run unit tests [ Olivier Sallou ] * d/rules: remove extension from binaries

    2013-07-29 - Olivier Sallou <osallou@debian.org> libbio-graphics-perl (2.37-1) unstable; urgency=low * New upstream release 2.37 * Remove failing tests (Closes: #718147).

    2013-05-05 - Charles Plessy <plessy@debian.org> libbio-graphics-perl (2.33-1) unstable; urgency=low befc3bc Imported Upstream version 2.33 68d9d7b Removed obsolete DM-Upload-Allowed field. 3c16457 Normalised Debian control and copyright files with config-model-edit. 2e26637 Removed obsolete Breaks statement. bdf87e1 Using Debhelper 9. d06499c Normalised VCS URLs following Lintian's standard. 72c9b22 Conforms to Policy 3.9.4.

    2012-12-15 - Olivier Sallou <osallou@debian.org> libbio-graphics-perl (2.32-1) unstable; urgency=low 63f795d New upstream release 2.32

    2012-12-15 - Olivier Sallou <osallou@debian.org> libbio-graphics-perl (2.31-1) unstable; urgency=low e5dd936 New upstream release 2.31

    2012-09-09 - Charles Plessy <plessy@debian.org> libbio-graphics-perl (2.29-1) unstable; urgency=low 5f027b7 Imported Upstream version 2.29. bdb8255 Summarised license for the whole package with a header field. 9ce13ce Conforms to Debian Policy version 3.9.3.

    2012-02-20 - Charles Plessy <plessy@debian.org> libbio-graphics-perl (2.26-1) unstable; urgency=low * New upstream release (Closes: #660481).

    2011-07-14 - Charles Plessy <plessy@debian.org> libbio-graphics-perl (2.24-1) unstable; urgency=low * New usptream release. * Replaced deprecated ‘<’ by ‘<<’ in debian/control. * Renamed debian/README.Debian debian/README.test, as it only discusses tests * Incremented Standards-Version to reflect conformance with Policy 3.9.1 (debian/control, no changes needed).

    2011-03-23 - Charles Plessy <plessy@debian.org> libbio-graphics-perl (2.14-1) unstable; urgency=low * New upstream release. * Converted debian/copyright to DEP-5 machine-readable format. * Incremented Standards-Version to reflect conformance with Policy 3.9.1 (debian/control, no changes needed). * Source package now managed with Git (debian/control). * Using Debhelper 8 (debian/control, debian/compat).

    Advertisement
    Advertisement