libbio-asn1-entrezgene-perl_1.700-1_all.deb


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Description

libbio-asn1-entrezgene-perl - parser for NCBI Entrez Gene and NCBI Sequence records

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: libbio-asn1-entrezgene-perl
Package version: 1.700
Package release: 1
Package architecture: all
Package type: deb
Installed size: 141 B
Download size: 39.94 KB
Official Mirror: ftp.br.debian.org
Bio::ASN1::EntrezGene and Bio::ASN1::Sequence are regular expression-based parsers for NCBI Entrez Gene genome databases (<http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene>). They parse ASN.1-formatted Entrez Gene records and NCBI sequences, returning data structures that contain all data items from the gene records or the sequence records. The parser will report error & line number if input data does not conform to the NCBI Entrez Gene genome or NCBI Sequence annotation file format. Bio::ASN1::Sequence is basically a modified version of the high-performance Bio::ASN1::EntrezGene parser. However this standalone module exists since it is more efficient to keep Sequence-specific code out of EntrezGene.pm.

Requires

    Download

    Source package: libbio-asn1-entrezgene-perl

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install libbio-asn1-entrezgene-perl deb package:
      # sudo apt-get install libbio-asn1-entrezgene-perl

    Files

    • /usr/share/doc/libbio-asn1-entrezgene-perl/changelog.Debian.gz
    • /usr/share/doc/libbio-asn1-entrezgene-perl/changelog.gz
    • /usr/share/doc/libbio-asn1-entrezgene-perl/copyright
    • /usr/share/doc/libbio-asn1-entrezgene-perl/examples/indexer_test.pl
    • /usr/share/doc/libbio-asn1-entrezgene-perl/examples/parse_entrez_gene_example.pl.gz
    • /usr/share/doc/libbio-asn1-entrezgene-perl/examples/parse_sequence_example.pl
    • /usr/share/doc/libbio-asn1-entrezgene-perl/examples/regex_parser_test.pl
    • /usr/share/man/man3/Bio::ASN1::EntrezGene.3pm.gz
    • /usr/share/man/man3/Bio::ASN1::EntrezGene::Indexer.3pm.gz
    • /usr/share/man/man3/Bio::ASN1::Sequence.3pm.gz
    • /usr/share/man/man3/Bio::ASN1::Sequence::Indexer.3pm.gz
    • /usr/share/perl5/Bio/ASN1/EntrezGene.pm
    • /usr/share/perl5/Bio/ASN1/Sequence.pm
    • /usr/share/perl5/Bio/ASN1/EntrezGene/Indexer.pm
    • /usr/share/perl5/Bio/ASN1/Sequence/Indexer.pm

    Changelog

    2013-09-17 - gregor herrmann <gregoa@debian.org> libbio-asn1-entrezgene-perl (1.700-1) unstable; urgency=low [ Salvatore Bonaccorso ] * Change Vcs-Git to canonical URI (git://anonscm.debian.org) * Change search.cpan.org based URIs to metacpan.org based URIs [ Axel Beckert ] * debian/copyright: migrate pre-1.0 format to 1.0 using "cme fix dpkg- copyright" [ gregor herrmann ] * New upstream release. * Drop spelling patch, applied upstream. * Update years of upstream and packaging copyright. * Declare compliance with Debian Policy 3.9.4.

    2012-01-12 - Florian Schlichting <fschlich@zedat.fu-berlin.de> libbio-asn1-entrezgene-perl (1.100-1) unstable; urgency=low [ Florian Schlichting ] * Imported Upstream version 1.100. * Bumped debhelper compatibility to 8, switched to short d/rules. * Set source format to "3.0 (quilt)". * Refreshed debian/copyright. * Bumped Standards-Version to 3.9.2 (no change). * Added myself to Uploaders. * Added fix-spelling-error.patch. [ Nathan Handler ] * debian/watch: Update to ignore development releases. [ Salvatore Bonaccorso ] * debian/control: Changed: Replace versioned (build-)dependency on perl (>= 5.6.0-{12,16}) with an unversioned dependency on perl (as permitted by Debian Policy 3.8.3). [ Ansgar Burchardt ] * debian/control: Convert Vcs-* fields to Git. [ gregor herrmann ] * debian/watch: add uversionmangles to deal with version suffix and 2-digit minor versions.

    2009-01-07 - gregor herrmann <gregoa@debian.org> libbio-asn1-entrezgene-perl (1.091-2) unstable; urgency=low [ David Paleino ] * Removed myself from Uploaders (Closes: #509506) [ gregor herrmann ] * debian/control: - added: Vcs-Svn field (source stanza); Vcs-Browser field (source stanza); Homepage field (source stanza). Removed: Homepage pseudo-field (Description); XS-Vcs-Svn fields. (source stanza) - added: ${misc:Depends} to Depends: field - set Standards-Version to 3.8.0 (no changes) - add /me to Uploaders * debian/watch: use dist-based URL. * Set debhelper compatibility level to 7; adapt debian/{control,compat,rules}. * debian/copyright: switch to new format.

    2007-09-13 - David Paleino <d.paleino@gmail.com> libbio-asn1-entrezgene-perl (1.091-1) unstable; urgency=low * Initial release (Closes: #442135)

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