libbio-asn1-entrezgene-perl_1.700-1_all.deb


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Description

libbio-asn1-entrezgene-perl - parser for NCBI Entrez Gene and NCBI Sequence records

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libbio-asn1-entrezgene-perl
Package version 1.700
Package release 1
Package architecture all
Package type deb
Installed size 141 B
Download size 39.94 KB
Official Mirror ftp.br.debian.org
Bio::ASN1::EntrezGene and Bio::ASN1::Sequence are regular expression-based
parsers for NCBI Entrez Gene genome databases
(<http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene>).
They parse ASN.1-formatted Entrez Gene records and NCBI sequences,
returning data structures that contain all data items from the gene records
or the sequence records.
The parser will report error & line number if input data does not conform to
the NCBI Entrez Gene genome or NCBI Sequence annotation file format.
Bio::ASN1::Sequence is basically a modified version of the high-performance
Bio::ASN1::EntrezGene parser. However this standalone module exists since it
is more efficient to keep Sequence-specific code out of EntrezGene.pm.

Alternatives

Package Version Architecture Repository
libbio-asn1-entrezgene-perl_1.700-1_all.deb 1.700 all Debian Main
libbio-asn1-entrezgene-perl - - -

Requires

Name Value
perl -

Download

Type URL
Binary Package libbio-asn1-entrezgene-perl_1.700-1_all.deb
Source Package libbio-asn1-entrezgene-perl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbio-asn1-entrezgene-perl deb package:
    # sudo apt-get install libbio-asn1-entrezgene-perl

Files

Path
/usr/share/doc/libbio-asn1-entrezgene-perl/changelog.Debian.gz
/usr/share/doc/libbio-asn1-entrezgene-perl/changelog.gz
/usr/share/doc/libbio-asn1-entrezgene-perl/copyright
/usr/share/doc/libbio-asn1-entrezgene-perl/examples/indexer_test.pl
/usr/share/doc/libbio-asn1-entrezgene-perl/examples/parse_entrez_gene_example.pl.gz
/usr/share/doc/libbio-asn1-entrezgene-perl/examples/parse_sequence_example.pl
/usr/share/doc/libbio-asn1-entrezgene-perl/examples/regex_parser_test.pl
/usr/share/man/man3/Bio::ASN1::EntrezGene.3pm.gz
/usr/share/man/man3/Bio::ASN1::EntrezGene::Indexer.3pm.gz
/usr/share/man/man3/Bio::ASN1::Sequence.3pm.gz
/usr/share/man/man3/Bio::ASN1::Sequence::Indexer.3pm.gz
/usr/share/perl5/Bio/ASN1/EntrezGene.pm
/usr/share/perl5/Bio/ASN1/Sequence.pm
/usr/share/perl5/Bio/ASN1/EntrezGene/Indexer.pm
/usr/share/perl5/Bio/ASN1/Sequence/Indexer.pm

Changelog

2013-09-17 - gregor herrmann <gregoa@debian.org>
libbio-asn1-entrezgene-perl (1.700-1) unstable; urgency=low
[ Salvatore Bonaccorso ]
* Change Vcs-Git to canonical URI (git://anonscm.debian.org)
* Change search.cpan.org based URIs to metacpan.org based URIs
[ Axel Beckert ]
* debian/copyright: migrate pre-1.0 format to 1.0 using "cme fix dpkg-
copyright"
[ gregor herrmann ]
* New upstream release.
* Drop spelling patch, applied upstream.
* Update years of upstream and packaging copyright.
* Declare compliance with Debian Policy 3.9.4.
2012-01-12 - Florian Schlichting <fschlich@zedat.fu-berlin.de>
libbio-asn1-entrezgene-perl (1.100-1) unstable; urgency=low
[ Florian Schlichting ]
* Imported Upstream version 1.100.
* Bumped debhelper compatibility to 8, switched to short d/rules.
* Set source format to "3.0 (quilt)".
* Refreshed debian/copyright.
* Bumped Standards-Version to 3.9.2 (no change).
* Added myself to Uploaders.
* Added fix-spelling-error.patch.
[ Nathan Handler ]
* debian/watch: Update to ignore development releases.
[ Salvatore Bonaccorso ]
* debian/control: Changed: Replace versioned (build-)dependency on
perl (>= 5.6.0-{12,16}) with an unversioned dependency on perl (as
permitted by Debian Policy 3.8.3).
[ Ansgar Burchardt ]
* debian/control: Convert Vcs-* fields to Git.
[ gregor herrmann ]
* debian/watch: add uversionmangles to deal with version suffix and
2-digit minor versions.
2009-01-07 - gregor herrmann <gregoa@debian.org>
libbio-asn1-entrezgene-perl (1.091-2) unstable; urgency=low
[ David Paleino ]
* Removed myself from Uploaders (Closes: #509506)
[ gregor herrmann ]
* debian/control:
- added: Vcs-Svn field (source stanza); Vcs-Browser
field (source stanza); Homepage field (source stanza). Removed:
Homepage pseudo-field (Description); XS-Vcs-Svn fields.
(source stanza)
- added: ${misc:Depends} to Depends: field
- set Standards-Version to 3.8.0 (no changes)
- add /me to Uploaders
* debian/watch: use dist-based URL.
* Set debhelper compatibility level to 7; adapt
debian/{control,compat,rules}.
* debian/copyright: switch to new format.
2007-09-13 - David Paleino <d.paleino@gmail.com>
libbio-asn1-entrezgene-perl (1.091-1) unstable; urgency=low
* Initial release (Closes: #442135)

See Also

Package Description
libbio-chado-schema-perl_0.20000-1_all.deb DBIx::Class layer for the Chado database schema
libbio-das-lite-perl_2.04-1.1_all.deb implementation of the BioDas protocol
libbio-graphics-perl_2.39-2_all.deb Generate GD images of Bio::Seq objects
libbio-mage-perl_20030502.3-3_all.deb Container module for classes in the MAGE package: MAGE
libbio-mage-utils-perl_20030502.0-2_all.deb Extra modules for classes in the MAGE package: MAGE
libbio-perl-perl_1.6.924-1_all.deb BioPerl core perl modules
libbio-perl-run-perl_1.6.9-2_all.deb BioPerl wrappers: modules
libbio-primerdesigner-perl_0.07-3_all.deb Perl module to design PCR primers using primer3 and epcr
libbio-samtools-perl_1.39-1+b1_amd64.deb Perl interface to SamTools library for DNA sequencing
libbio-scf-perl_1.03-2+b1_amd64.deb Perl extension for reading and writing SCF sequence files
libbio2jack0-dev_0.9-2.1_amd64.deb oss/alsa to jack porting lib - development files
libbio2jack0_0.9-2.1_amd64.deb oss/alsa to jack porting lib - runtime files
libbiococoa-dev_2.2.2-2+b1_amd64.deb Bioinformatics framework for GNUstep and Cocoa (development files)
libbiococoa2_2.2.2-2+b1_amd64.deb Bioinformatics framework for GNUstep and Cocoa (library files)
libbiojava-java-demos_1.7.1-5_all.deb Example programs for BioJava
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