libace-perl_1.92-3+b1_amd64.deb


Advertisement

Description

libace-perl - Object-Oriented Access to ACEDB Databases

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: libace-perl
Package version: 1.92
Package release: 3+b1
Package architecture: amd64
Package type: deb
Installed size: 734 B
Download size: 303.10 KB
Official Mirror: ftp.br.debian.org
AcePerl is an object-oriented Perl interface for the AceDB database. It provides functionality for connecting to remote AceDB databases, performing queries, fetching ACE objects, and updating databases. The programmer's API is compatible with the JADE Java API, and interoperable with the API used by BoulderIO. AceDB is a genome database system developed since 1989 primarily by Jean Thierry-Mieg (CNRS, Montpellier) and Richard Durbin (Sanger Institute). It was originally developed for the C.elegans genome project , from which its name was derived (A C. elegans DataBase).

Alternatives

    Download

    Source package: libace-perl

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install libace-perl deb package:
      # sudo apt-get install libace-perl

    Files

    • /usr/bin/ace
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Freesubs.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Iterator.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Local.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Model.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Object.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/RPC.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Sequence.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/SocketServer.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Browser/AceSubs.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Browser/GeneSubs.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Browser/LocalSiteDefs.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Browser/SearchSubs.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Browser/SiteDefs.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Browser/TreeSubs.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Fk.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/GlyphFactory.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Panel.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Track.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/anchored_arrow.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/arrow.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/box.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/crossbox.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/dot.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/ex.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/graded_segments.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/group.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/line.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/primers.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/segments.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/span.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/toomany.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/transcript.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Graphics/Glyph/triangle.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Object/Wormbase.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Sequence/Feature.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Sequence/FeatureList.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Sequence/GappedAlignment.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Sequence/Gene.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Sequence/Homol.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Sequence/Multi.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/Ace/Sequence/Transcript.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/GFF/Filehandle.pm
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/_register_iterator.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/_restore_iterator.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/_save_iterator.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/_unregister_iterator.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/auto_save.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/autosplit.ix
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/class_count.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/classes.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/date.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/date_style.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/datetime.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/debug.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/fetch_many.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/find.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/freeprotect.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/grep.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/layout.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/new.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/parse.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/parse_file.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/parse_longtext.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/pick.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/ping.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/put.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/split.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/status.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/timestamps.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/title.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/version.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Freesubs/Freesubs.so
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/_asAce.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/_asHTML.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/_asTable.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/_asXML.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/_default_makeHTML.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/_insert.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/_special_dump.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/_to_ace_date.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/_xmlNumber.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/add_row.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/add_tree.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/asAce.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/asDNA.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/asGif.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/asHTML.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/asPeptide.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/asString.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/asTable.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/asXML.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/autosplit.ix
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/comment.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/commit.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/date_style.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/debug.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/delete.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/escapeXML.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/isComment.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/kill.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/replace.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/rollback.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/tags.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Object/timestamp.al
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/RPC/RPC.so
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Sequence/autosplit.ix
    • /usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Ace/Sequence/Feature/autosplit.ix
    • /usr/share/doc/libace-perl/README
    • /usr/share/doc/libace-perl/README.ACEBROWSER.gz
    • /usr/share/doc/libace-perl/README.Debian
    • /usr/share/doc/libace-perl/changelog.Debian.amd64.gz
    • /usr/share/doc/libace-perl/changelog.Debian.gz
    • /usr/share/doc/libace-perl/changelog.gz
    • /usr/share/doc/libace-perl/copyright
    • /usr/share/doc/libace-perl/examples/README
    • /usr/share/doc/libace-perl/examples/ace.pl.gz
    • /usr/share/doc/libace-perl/examples/authors.pl
    • /usr/share/doc/libace-perl/examples/authors2.pl
    • /usr/share/doc/libace-perl/examples/coauthors.pl
    • /usr/share/doc/libace-perl/examples/draw_seqmap.pl
    • /usr/share/doc/libace-perl/examples/dump_cdna.pl
    • /usr/share/doc/libace-perl/examples/exons.pl
    • /usr/share/doc/libace-perl/examples/exons.txt
    • /usr/share/doc/libace-perl/examples/gif.pl
    • /usr/share/doc/libace-perl/examples/sequence.pl
    • /usr/share/doc/libace-perl/examples/upstream.pl
    • /usr/share/doc/libace-perl/examples/upstream2.pl
    • /usr/share/man/man1/ace.1.gz
    • /usr/share/man/man3/Ace.3pm.gz
    • /usr/share/man/man3/Ace::Browser::AceSubs.3pm.gz
    • /usr/share/man/man3/Ace::Browser::LocalSiteDefs.3pm.gz
    • /usr/share/man/man3/Ace::Browser::SearchSubs.3pm.gz
    • /usr/share/man/man3/Ace::Browser::SiteDefs.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Fk.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::anchored_arrow.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::arrow.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::box.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::dot.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::ex.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::graded_segments.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::group.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::line.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::primers.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::segments.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::span.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::toomany.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::transcript.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Glyph::triangle.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::GlyphFactory.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Panel.3pm.gz
    • /usr/share/man/man3/Ace::Graphics::Track.3pm.gz
    • /usr/share/man/man3/Ace::Iterator.3pm.gz
    • /usr/share/man/man3/Ace::Local.3pm.gz
    • /usr/share/man/man3/Ace::Model.3pm.gz
    • /usr/share/man/man3/Ace::Object.3pm.gz
    • /usr/share/man/man3/Ace::Sequence.3pm.gz
    • /usr/share/man/man3/Ace::Sequence::Feature.3pm.gz
    • /usr/share/man/man3/Ace::Sequence::FeatureList.3pm.gz
    • /usr/share/man/man3/Ace::Sequence::GappedAlignment.3pm.gz
    • /usr/share/man/man3/Ace::Sequence::Gene.3pm.gz
    • /usr/share/man/man3/Ace::Sequence::Homol.3pm.gz
    • /usr/share/man/man3/Ace::Sequence::Multi.3pm.gz
    • /usr/share/man/man3/Ace::Sequence::Transcript.3pm.gz

    Changelog

    2013-10-29 - Andreas Tille <tille@debian.org> libace-perl (1.92-3) unstable; urgency=low * debian/source/format: 3.0 (quilt) * debian/control: - added myself to Uploaders - cme fix dpkg-control - debhelper 9 - canonical Vcs fields * debian/README.Debian: Remark about hard coding of build directory in probably unused file. * debian/rules: - use short dh - enable propagation of hardening options * debian/upstream: Take over content of reference (DOI was wrongly specified at URL so I decided to remove) * debian/ace.1: automatically created manpage was broken - use help2man to create some valid ace.1 * debian/copyright: DEP5

    2009-08-02 - Charles Plessy <plessy@debian.org> libace-perl (1.92-2) unstable; urgency=low * debian/rules - Replaced an echo command by the Perl equivalent in debian/rules (Closes: #535390). - Use dh clean and binary-arch, and created debian/docs and debian/examples. - Override dh_auto_install, that created duplicates. * debian/control: - Added links to the Subversion repository where libace-perl is. - Incremented Standards-Version to reflect conformance with Policy 3.8.2 (no changes needed). - Made the Debian Med packaging team the maintainer. - Dropped the build dependency on Perl. * Updated debian/copyright to my latest exploration of a possible machine-readable format. * Added bibliographic information in BibTeX format in debian/reference.

    2008-11-10 - Charles Plessy <plessy@debian.org> libace-perl (1.92-1) unstable; urgency=low * Initial Release (Closes: #468760).

    Advertisement
    Advertisement