kissplice_2.2.1-3_amd64.deb


Advertisement

Description

kissplice - Detection of various kinds of polymorphisms in RNA-seq data

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name kissplice
Package version 2.2.1
Package release 3
Package architecture amd64
Package type deb
Installed size 1.20 KB
Download size 586.47 KB
Official Mirror ftp.br.debian.org
KisSplice is a piece of software that enables the analysis of RNA-seq data
with or without a reference genome. It is an exact local transcriptome
assembler that allows one to identify SNPs, indels and alternative splicing
events. It can deal with an arbitrary number of biological conditions, and
will quantify each variant in each condition.
It has been tested on Illumina datasets of up to 1G reads.
Its memory consumption is around 5Gb for 100M reads.

Alternatives

Package Version Architecture Repository
kissplice - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.9
python:any -
zlib1g >= 1:1.2.3.4

Download

Type URL
Binary Package kissplice_2.2.1-3_amd64.deb
Source Package kissplice

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install kissplice deb package:
    # sudo apt-get install kissplice

Files

Path
/usr/bin/kissplice
/usr/lib/kissplice/ks_bubble_enumeration
/usr/lib/kissplice/ks_clean_duplicates
/usr/lib/kissplice/ks_debruijn4
/usr/lib/kissplice/ks_error_removal
/usr/lib/kissplice/ks_kissreadsSNPS
/usr/lib/kissplice/ks_kissreadsSplice
/usr/lib/kissplice/ks_print_bcc
/usr/lib/kissplice/ks_run_modules
/usr/share/doc-base/kissplice
/usr/share/doc/kissplice/changelog.Debian.gz
/usr/share/doc/kissplice/changelog.gz
/usr/share/doc/kissplice/copyright
/usr/share/doc/kissplice/user_guide.pdf
/usr/share/man/man1/kissplice.1.gz

Changelog

2015-03-14 - Andreas Tille <tille@debian.org>
kissplice (2.2.1-3) unstable; urgency=medium
* Architecture attribute in a single line
Closes: #780473
2014-10-10 - Andreas Tille <tille@debian.org>
kissplice (2.2.1-2) unstable; urgency=medium
[ David Parsons ]
* Restrict architectures to 64Bit only
[ Andreas Tille ]
* cme fix dpkg-control
2014-08-26 - David Parsons <david.parsons@inria.fr>
kissplice (2.2.1-1) unstable; urgency=medium
* New upstream version
* Fix watch
2014-01-31 - Andreas Tille <tille@debian.org>
kissplice (2.1.0-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
2013-06-05 - David Parsons <david.parsons@inria.fr>
kissplice (1.8.3-1) unstable; urgency=low
* Initial debian release (Closes: #711946)

See Also

Package Description
kiten_4.14.0-1_amd64.deb Japanese reference and study aid for KDE
kjots_4.14.1-1+deb8u1_amd64.deb note-taking utility
kjumpingcube_4.13.1-1_amd64.deb simple tactical game
klatexformula_3.2.7-1_amd64.deb GUI to easily get an image from a LaTeX formula or equation
klavaro_3.01-1_amd64.deb Flexible touch typing tutor
kleopatra_4.14.1-1+deb8u1_amd64.deb certificate Manager
klettres-data_4.14.1-1_all.deb data files for KLettres foreign alphabet tutor
klettres_4.14.1-1_amd64.deb foreign alphabet tutor for KDE
klibc-utils_2.0.4-2_amd64.deb small utilities built with klibc for early boot
klick_0.12.2-2_amd64.deb advanced metronome for JACK
klickety_4.12.4-1_amd64.deb SameGame puzzle game
klines_4.12.2-2_amd64.deb color lines game
klinkstatus_4.14.1-1_amd64.deb web link validity checker
klipper_4.11.13-2_amd64.deb clipboard manager
klog_0.6.2-1_amd64.deb KDE ham radio logging program
Advertisement
Advertisement