kissplice_2.2.1-3_amd64.deb


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Description

kissplice - Detection of various kinds of polymorphisms in RNA-seq data

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: kissplice
Package version: 2.2.1
Package release: 3
Package architecture: amd64
Package type: deb
Installed size: 1.20 KB
Download size: 586.47 KB
Official Mirror: ftp.br.debian.org
KisSplice is a piece of software that enables the analysis of RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows one to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads.

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    Source package: kissplice

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install kissplice deb package:
      # sudo apt-get install kissplice

    Files

    • /usr/bin/kissplice
    • /usr/lib/kissplice/ks_bubble_enumeration
    • /usr/lib/kissplice/ks_clean_duplicates
    • /usr/lib/kissplice/ks_debruijn4
    • /usr/lib/kissplice/ks_error_removal
    • /usr/lib/kissplice/ks_kissreadsSNPS
    • /usr/lib/kissplice/ks_kissreadsSplice
    • /usr/lib/kissplice/ks_print_bcc
    • /usr/lib/kissplice/ks_run_modules
    • /usr/share/doc-base/kissplice
    • /usr/share/doc/kissplice/changelog.Debian.gz
    • /usr/share/doc/kissplice/changelog.gz
    • /usr/share/doc/kissplice/copyright
    • /usr/share/doc/kissplice/user_guide.pdf
    • /usr/share/man/man1/kissplice.1.gz

    Changelog

    2015-03-14 - Andreas Tille <tille@debian.org> kissplice (2.2.1-3) unstable; urgency=medium * Architecture attribute in a single line Closes: #780473

    2014-10-10 - Andreas Tille <tille@debian.org> kissplice (2.2.1-2) unstable; urgency=medium [ David Parsons ] * Restrict architectures to 64Bit only [ Andreas Tille ] * cme fix dpkg-control

    2014-08-26 - David Parsons <david.parsons@inria.fr> kissplice (2.2.1-1) unstable; urgency=medium * New upstream version * Fix watch

    2014-01-31 - Andreas Tille <tille@debian.org> kissplice (2.1.0-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control

    2013-06-05 - David Parsons <david.parsons@inria.fr> kissplice (1.8.3-1) unstable; urgency=low * Initial debian release (Closes: #711946)

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