kalign_2.03+20110620-2_amd64.deb


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Description

kalign - Global and progressive multiple sequence alignment

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: kalign
Package version: 2.03+20110620
Package release: 2
Package architecture: amd64
Package type: deb
Installed size: 244 B
Download size: 92.56 KB
Official Mirror: ftp.br.debian.org
Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.

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Requires

    Download

    Source package: kalign

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install kalign deb package:
      # sudo apt-get install kalign

    Files

    • /etc/bash_completion.d/kalign
    • /usr/bin/kalign
    • /usr/share/doc/kalign/README
    • /usr/share/doc/kalign/changelog.Debian.gz
    • /usr/share/doc/kalign/copyright
    • /usr/share/man/man1/kalign.1.gz

    Changelog

    2012-03-29 - Andreas Tille <tille@debian.org> kalign (1:2.03+20110620-2) unstable; urgency=low [ Charles Plessy ] * renamed debian/upstream-metadata.yaml to debian/upstream [ Andreas Tille ] * debian/upstream: - Added another citation from tasks file - Fixed Homepage * debian/source/format: 3.0 (quilt) * debian/watch: Fixed hint to download URL * debian/control: - Fixed Homepage - Standards-Version: 3.9.3 (no changes needed) * debian/copyright: Fixed DEP5 issues and verified using cme fix dpkg-copyright * debhelper 9 (control+compat)

    2011-06-25 - Charles Plessy <plessy@debian.org> kalign (1:2.03+20110620-1) unstable; urgency=low * New upstream release. Using 2.04 as a version number was a mistake of mine, it should have been called 2.03+20081031 as Upstream sometimes updates the source archive ‘current.tar.gz’ without incrementing the version number. * Collected information about Upstream in ‘debian/upstream-metadata.yaml’. * Using Debhelper 8 (debian/compat, debian/control). * Corrected VCS information in debian/control. * Enhances: bioperl-run, that has a kalign wrapper (debian/control). * Incremented Standards-Version to reflect conformance with Policy 3.9.2. (debian/control, no changes needed).

    2009-10-06 - Andreas Tille <tille@debian.org> kalign (2.04-2) unstable; urgency=low [ David Paleino ] * Removed myself from Uploaders [ Andreas Tille ] * debian/control: - Standards-Version: 3.8.3 - debhelper (>= 7.1) to use override facility * debian/rules: - removed code to create manpage - just keep the created one - short rules file using dh * debian/watch: - deactivated; upstream does not seem to respond to our request to enable versioned tarballs - so the watch file makes no sense Closes: #456479 * Applied patch to enable bash completion. Thanks to David Paleino <d.paleino@gmail.com> Closes: #446047

    2009-02-26 - Charles Plessy <plessy@debian.org> kalign (2.04-1) unstable; urgency=low * New upstream release. * debian/copyright made machine-readable. * debian/rules: replaced deprecated dh_clean -k by dh_prep. * debian/control: - Updated my email address (debian/control). - Checked compliance with Policy 3.8.0 (no changes needed). - Using debhelper 7 (also in debian/compat). - Upadated description and moved reference to debian/reference. * debian/kalign.1*: updated the manual pages.

    2008-03-18 - Andreas Tille <tille@debian.org> kalign (2.03-2) unstable; urgency=low [ Charles Plessy ] * debian/control: - Add Subversion repository URL to debian/control. - Moved the Homepage: field out from the package's description. - Enhances: t-coffee. [ David Paleino ] * debian/kalign.1 added - manpages are now statically generated * debian/control: - B-D updated (see above) - added myself to Uploaders - moved XS-Vcs-* fields to Vcs-* * debian/rules: - reflecting static build of manpages - minor changes * Updated to Standards-Version 3.7.3 (no changes needed) [ Andreas Tille ] * Added myself to Uploaders

    2007-02-21 - Charles Plessy <charles-debian-nospam@plessy.org> kalign (2.03-1) unstable; urgency=low * New upstream release. * Mended the watch file. * Updated the manpage.

    2006-04-29 - Charles Plessy <charles-debian-nospam@plessy.org> kalign (1.04-1) unstable; urgency=low * Initial release Closes: #365344

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