jmol_12.2.32+dfsg2-1_all.deb


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Description

jmol - Molecular Viewer

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: jmol
Package version: 12.2.32+dfsg2
Package release: 1
Package architecture: all
Package type: deb
Installed size: 702 B
Download size: 252.64 KB
Official Mirror: ftp.br.debian.org
Jmol is a Java molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs. It includes with features for chemicals, crystals, materials and biomolecules. Jmol might be useful for students, educators, and researchers in chemistry and biochemistry. File formats read by Jmol include PDB, XYZ, CIF, CML, MDL Molfile, Gaussian, GAMESS, MOPAC, ABINIT, ACES-II, Dalton and VASP.

Alternatives

Requires

    Download

    Source package: jmol

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install jmol deb package:
      # sudo apt-get install jmol

    Files

    • /usr/bin/jmol
    • /usr/share/applications/jmol.desktop
    • /usr/share/doc-base/jmol
    • /usr/share/doc/jmol/COPYRIGHT.txt
    • /usr/share/doc/jmol/README.txt.gz
    • /usr/share/doc/jmol/changelog.Debian.gz
    • /usr/share/doc/jmol/changelog.gz
    • /usr/share/doc/jmol/copyright
    • /usr/share/doc/jmol/html/en/ch01.html
    • /usr/share/doc/jmol/html/en/ch02.html
    • /usr/share/doc/jmol/html/en/ch02s02.html
    • /usr/share/doc/jmol/html/en/ch02s03.html
    • /usr/share/doc/jmol/html/en/ch02s04.html
    • /usr/share/doc/jmol/html/en/ch02s05.html
    • /usr/share/doc/jmol/html/en/ch02s06.html
    • /usr/share/doc/jmol/html/en/ch02s07.html
    • /usr/share/doc/jmol/html/en/ch03.html
    • /usr/share/doc/jmol/html/en/ch03s02.html
    • /usr/share/doc/jmol/html/en/ch03s03.html
    • /usr/share/doc/jmol/html/en/ch03s04.html
    • /usr/share/doc/jmol/html/en/ch03s05.html
    • /usr/share/doc/jmol/html/en/ch04.html
    • /usr/share/doc/jmol/html/en/index.html
    • /usr/share/doc/jmol/html/fr/ch01.html
    • /usr/share/doc/jmol/html/fr/ch02.html
    • /usr/share/doc/jmol/html/fr/ch02s02.html
    • /usr/share/doc/jmol/html/fr/ch02s03.html
    • /usr/share/doc/jmol/html/fr/ch02s04.html
    • /usr/share/doc/jmol/html/fr/ch03.html
    • /usr/share/doc/jmol/html/fr/ch03s02.html
    • /usr/share/doc/jmol/html/fr/ch03s03.html
    • /usr/share/doc/jmol/html/fr/ch03s04.html
    • /usr/share/doc/jmol/html/fr/ch03s05.html
    • /usr/share/doc/jmol/html/fr/ch04.html
    • /usr/share/doc/jmol/html/fr/index.html
    • /usr/share/man/man1/jmol.1.gz
    • /usr/share/menu/jmol
    • /usr/share/pixmaps/jmol-icon.png

    Changelog

    2012-11-12 - Michael Banck <mbanck@debian.org> jmol (12.2.32+dfsg2-1) unstable; urgency=low * New repackaged upstream tarball, removing the src/com/json directory due to licensing issues (closes: #692622). * debian/patches/remove_json.patch: New patch, adapting the codebase to the removal of the src/com/json package, taken from upstream revision 17710. * debian/get-orig-source.sh: Remove src/com/json directory when repackaging.

    2012-06-29 - Daniel Leidert <dleidert@debian.org> jmol (12.2.32+dfsg-1) unstable; urgency=low * New upstream release.

    2012-06-24 - Daniel Leidert <dleidert@debian.org> jmol (12.2.30+dfsg-1) unstable; urgency=low * New upstream release. * debian/chime2jmol.1.xml: Turned into debian/chime2jmol.1. * debian/jmol.1.xml: Turned into debian/jmol.1. * debian/compat: Bumped level to 8. * debian/control (Standards-Version): Bumped to 3.9.3. (Build-Depends): Increased dh version. (Depends): Fixed needless-dependency-on-jre. Added libwww-perl for CGI script. (Section): Fixed binary-control-field-duplicates-source. (Uploaders): Added myself. * debian/copyright: Massive update. * debian/jmol.doc-base: Adjusted. * debian/jmol.install: Path fix. * debian/jmol-applet.doc-base: Added. * debian/jmol-applet.install: Install applet guide. * debian/menu: Renamed to debian/jmol.menu. * debian/rules: Rewritten for dh 8 including addons. Set JAVA_HOME (closes: #678057). * debian/upstream: Added. * debian/patches/*.patch: Added header tags. * debian/README.source: Added. * debian/get-orig-source.sh: Also remove .exe, .dll and non-free sources.

    2012-03-19 - Michael Banck <mbanck@debian.org> jmol (12.2.18+dfsg-1) unstable; urgency=low * New upstream point release.

    2011-10-31 - Michael Banck <mbanck@debian.org> jmol (12.2.2+dfsg-1) unstable; urgency=low * New upstream release; Closes: #646253. [ Daniel Leidert ] * debian/control (Standards-Version): Bumped to 3.9.2. (XS-Vcs-*): Renamed to Vcs-*. (Homepage): Dropped duplicated field. * debian/get-orig-source.sh: Remove pre-compiled and source-less stuff. * debian/watch: Only check for stable releases. Handle DFSG compatible versions. [ Michael Banck ] * debian/patches/chime2jmol_binary.patch: Refreshed. * debian/control (jmol): Remove Suggests on jmol-doc, package does not exist. * debian/get-orig-source.sh: Remove newly introduced tools/*.jar as well. * debian/control (Build-Depends): Added icedtea-plugin; Closes: #628292. * debian/source/include-binaries: Update. * debian/control (Build-Depends): Added libnaga-java. * debian/rules (build-stamp): Symlink all required jars into jars/ prior to build and do no longer define ${lib.dir}. * debian/rules (clean): Remove jar symlinks from jars/. * debian/rules (install): Account for rename of chime2jmol.pl to chime2jmol_old.pl.

    2011-04-17 - Michael Banck <mbanck@debian.org> jmol (12.1.42-1) experimental; urgency=low * New upstream development release; Closes: #623075.

    2011-04-11 - Michael Banck <mbanck@debian.org> jmol (12.0.40-1) unstable; urgency=low * New upstream release. * debian/patches/missing_directories.patch: Dropped, no longer needed.

    2011-01-30 - Michael Banck <mbanck@debian.org> jmol (12.0.28-1) unstable; urgency=low * Initial release; Closes: #512930.

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