jellyfish-examples_2.1.4-1_amd64.deb


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Description

jellyfish-examples - count k-mers in DNA sequences (examples for testing)

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name jellyfish-examples
Package version 2.1.4
Package release 1
Package architecture amd64
Package type deb
Installed size 1.89 KB
Download size 452.17 KB
Official Mirror ftp.br.debian.org
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
This package contains examples to test the package

Alternatives

Package Version Architecture Repository
jellyfish-examples - - -

Requires

Name Value
jellyfish -
libc6 >= 2.14
libgcc1 >= 1:4.1.1
libjellyfish-2.0-2 -
libstdc++6 >= 4.9

Download

Type URL
Binary Package jellyfish-examples_2.1.4-1_amd64.deb
Source Package jellyfish

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install jellyfish-examples deb package:
    # sudo apt-get install jellyfish-examples

Files

Path
/usr/lib/jellyfish/bin/generate_sequence
/usr/lib/jellyfish/bin/jellyfish
/usr/lib/jellyfish/bin/test_all
/usr/share/doc/jellyfish-examples/changelog.Debian.gz
/usr/share/doc/jellyfish-examples/changelog.gz
/usr/share/doc/jellyfish-examples/copyright
/usr/share/doc/jellyfish-examples/examples/big.sh
/usr/share/doc/jellyfish-examples/examples/bloom_counter.sh
/usr/share/doc/jellyfish-examples/examples/bloom_filter.sh
/usr/share/doc/jellyfish-examples/examples/compat.sh
/usr/share/doc/jellyfish-examples/examples/compat.sh.in
/usr/share/doc/jellyfish-examples/examples/from_stream.sh
/usr/share/doc/jellyfish-examples/examples/from_stream_fastq.sh
/usr/share/doc/jellyfish-examples/examples/generate_fastq_sequence.sh
/usr/share/doc/jellyfish-examples/examples/generate_sequence.sh
/usr/share/doc/jellyfish-examples/examples/large_key.sh
/usr/share/doc/jellyfish-examples/examples/merge.sh
/usr/share/doc/jellyfish-examples/examples/min_qual.sh
/usr/share/doc/jellyfish-examples/examples/multi_file.sh
/usr/share/doc/jellyfish-examples/examples/multi_file_fastq.sh
/usr/share/doc/jellyfish-examples/examples/parallel_direct_indexing.sh
/usr/share/doc/jellyfish-examples/examples/parallel_fastq_direct_indexing.sh
/usr/share/doc/jellyfish-examples/examples/parallel_fastq_hashing.sh
/usr/share/doc/jellyfish-examples/examples/parallel_fastq_sequence_hashing.sh
/usr/share/doc/jellyfish-examples/examples/parallel_hashing.sh
/usr/share/doc/jellyfish-examples/examples/parsers.sh
/usr/share/doc/jellyfish-examples/examples/quality_filter.sh
/usr/share/doc/jellyfish-examples/examples/raw_hash.sh
/usr/share/doc/jellyfish-examples/examples/serial_direct_indexing.sh
/usr/share/doc/jellyfish-examples/examples/serial_hashing.sh
/usr/share/doc/jellyfish-examples/examples/small.sh
/usr/share/doc/jellyfish-examples/examples/subset_hashing.sh
/usr/share/doc/jellyfish-examples/examples/unit_tests.sh

Changelog

See jellyfish_2.1.4-1_amd64.deb changelog.

See Also

Package Description
jellyfish_2.1.4-1_amd64.deb count k-mers in DNA sequences
jemboss_6.6.0+dfsg-1_all.deb graphical user interface to EMBOSS
jenkins-crypto-util-doc_1.4-1_all.deb Documentation for Utility around Java Crypto API
jenkins-crypto-util_1.4-1_all.deb Jenkins Utility around Java Crypto API
jenkins-executable-war-doc_1.29-1_all.deb Documentation for jenkins-executable-war-java
jenkins-executable-war_1.29-1_all.deb Library for building executable .war files
jenkins-job-builder_0.9.0-0.2_all.deb Configure Jenkins using YAML files
jenkins-memory-monitor-doc_1.8-1_all.deb Documentation for jenkins-memory-monitor
jenkins-memory-monitor_1.8-1_all.deb Jenkins native integration for monitoring memory usage
jenkins-task-reactor-doc_1.4-1_all.deb Documentation for jenkins-task-reactor
jenkins-task-reactor_1.4-1_all.deb Task execution and control framework used in Jenkins
jenkins-test-annotations-doc_1.1-1_all.deb Documentation for jenkins-test-annotations
jenkins-test-annotations_1.1-1_all.deb Annotation library for tracking testing in Jenkins
jesred_1.2pl1-19_amd64.deb Redirector for the Squid proxy
jester_1.0-11_amd64.deb board game similar to Othello
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