jalview_2.7.dfsg-4_all.deb


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Description

jalview - multiple alignment editor

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name jalview
Package version 2.7.dfsg
Package release 4
Package architecture all
Package type deb
Installed size 3.52 KB
Download size 3.23 MB
Official Mirror ftp.br.debian.org
JalView is a Java alignment editor that can work with sequence
alignment produced by programs implementing alignment algorithms
such as clustalw, kalign and t-coffee.
It has lots of features, is actively developed, and will compare
advantageously to BioEdit, while being free as in free speech !

Alternatives

Package Version Architecture Repository
jalview_2.7.dfsg-4_all.deb 2.7.dfsg all Debian Main
jalview - - -

Requires

Name Value
ant -
default-jre -
icedtea-netx-common -
java-wrappers >= 0.1.22
java6-runtime -
javahelp2 -
jmol-applet -
libapache-mime4j-java -
libaxis-java -
libcastor-core-java -
libcastor-xml-java -
libcommons-discovery-java -
libcommons-logging-java -
libhttpclient-java -
libhttpcore-java -
libhttpmime-java -
libjaba-client-java -
libjmol-java >= 12.1.42
libjswingreader-java -
liblog4j1.2-java -
libmiglayout-java -
libvamsas-client-java -
openjdk-7-jdk -

Download

Type URL
Binary Package jalview_2.7.dfsg-4_all.deb
Source Package jalview

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install jalview deb package:
    # sudo apt-get install jalview

Files

Path
/usr/bin/jalview
/usr/share/doc/jalview/README
/usr/share/doc/jalview/changelog.Debian.gz
/usr/share/doc/jalview/copyright
/usr/share/java/jalview-2.7.jar
/usr/share/java/jalview.jar
/usr/share/man/man1/jalview.1.gz
/usr/share/menu/jalview

Changelog

2014-09-12 - Emmanuel Bourg <ebourg@apache.org>
jalview (2.7.dfsg-4) unstable; urgency=low
* Team upload
* Fixed a compilation error with Java 8 (Closes: #750746)
* Removed the unused build dependencies on libgnujaf-java, libgnumail-java,
libxalan2-java and libxerces2-java
* Updated Standards-Version to 3.9.5 (no changes)
* Moved the package to Git
* Switch to debhelper level 9
* debian/copyright: Fixed a license short name
2013-11-04 - Emmanuel Bourg <ebourg@apache.org>
jalview (2.7.dfsg-3) unstable; urgency=low
* Team upload.
[Emmanuel Bourg]
* Added a patch to compile with Apache Mime4J 0.7.2
* debian/control:
- Updated Standards-Version to 3.9.4 (no changes)
- Runtime dependency on default-jre | java6-runtime (Closes: #727791)
- Removed the duplicate build dependencies on javahelp2 and libaxis-java
- Fixed a typo in the package description (Closes: #676623)
* debian/copyright: Updated the Format URI
* Updated debian/watch to catch the new releases
* debian/rules:
- Added a clean target to allow rebuilds
- Added jsearch-indexer.jar to the classpath to fix the buildindices target
[Niels Thykier]
* Move package under under the Debian Java team with permission from
Vincent.
2011-11-07 - Vincent Fourmond <fourmond@debian.org>
jalview (2.7.dfsg-2) unstable; urgency=low
* Upload to unstable now that jmol is there too
* Pull patches/newer-jmol-api.diff from upstream's git repository to
make jalview work with jmol currently in unstable.
2011-10-19 - Vincent Fourmond <fourmond@debian.org>
jalview (2.7.dfsg-1) experimental; urgency=low
* Initial release (Closes: #507436)
* Adding a debian/new-upstream script to repackage the original tarball,
getting rid of the bundled precompiled JAR files (I love JAR files)
* Using dh 7 and javahelper
* Using jh_build for building
* Uploading to experimental as it works only with the version of jmol in
experimental

See Also

Package Description
jam_2.6-1_amd64.deb Software-build tool, replacement for make
jamin_0.97.14~cvs~81203-4_amd64.deb Audio mastering from a mixed down multitrack source with JACK
jaminid_0.99a-1.1_all.deb Small and fast daemon for Java applications
jamnntpd_1.2-1_amd64.deb NNTP Server allowing newsreaders to access a JAM messagebase
janino_2.7.0-2_all.deb runtime compiler for Java expressions - binary
japa_0.8.4-1_amd64.deb JACK and ALSA Perceptual Analyser
japi-compliance-checker_1.3.7-1_all.deb tool to compare compatibility of Java library API
japitools_0.9.7-1_all.deb Java API compatibility testing tools
jardiff_0.2-4_all.deb tool to visualise API differences between two JAR files
jargon-text_4.4.7-4_all.deb definitive compendium of hacker slang
jargon_4.0.0-5.1_all.deb the definitive compendium of hacker slang
jarwrapper_0.48+deb8u1_all.deb Run executable Java .jar files
jasmin-sable_2.4.0-4_all.deb Java class (.class) file assembler
java-common_0.52_all.deb Base of all Java packages
java-propose-classpath_0.48+deb8u1_all.deb Helper script to suggest a classpath for jar files
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