jalview - multiple alignment editor

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: jalview
Package version: 2.7.dfsg
Package release: 4
Package architecture: all
Package type: deb
Installed size: 3.52 KB
Download size: 3.23 MB
Official Mirror: ftp.br.debian.org
JalView is a Java alignment editor that can work with sequence alignment produced by programs implementing alignment algorithms such as clustalw, kalign and t-coffee. It has lots of features, is actively developed, and will compare advantageously to BioEdit, while being free as in free speech !



    Source package: jalview

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install jalview deb package:
      # sudo apt-get install jalview


    • /usr/bin/jalview
    • /usr/share/doc/jalview/README
    • /usr/share/doc/jalview/changelog.Debian.gz
    • /usr/share/doc/jalview/copyright
    • /usr/share/java/jalview-2.7.jar
    • /usr/share/java/jalview.jar
    • /usr/share/man/man1/jalview.1.gz
    • /usr/share/menu/jalview


    2014-09-12 - Emmanuel Bourg <ebourg@apache.org> jalview (2.7.dfsg-4) unstable; urgency=low * Team upload * Fixed a compilation error with Java 8 (Closes: #750746) * Removed the unused build dependencies on libgnujaf-java, libgnumail-java, libxalan2-java and libxerces2-java * Updated Standards-Version to 3.9.5 (no changes) * Moved the package to Git * Switch to debhelper level 9 * debian/copyright: Fixed a license short name

    2013-11-04 - Emmanuel Bourg <ebourg@apache.org> jalview (2.7.dfsg-3) unstable; urgency=low * Team upload. [Emmanuel Bourg] * Added a patch to compile with Apache Mime4J 0.7.2 * debian/control: - Updated Standards-Version to 3.9.4 (no changes) - Runtime dependency on default-jre | java6-runtime (Closes: #727791) - Removed the duplicate build dependencies on javahelp2 and libaxis-java - Fixed a typo in the package description (Closes: #676623) * debian/copyright: Updated the Format URI * Updated debian/watch to catch the new releases * debian/rules: - Added a clean target to allow rebuilds - Added jsearch-indexer.jar to the classpath to fix the buildindices target [Niels Thykier] * Move package under under the Debian Java team with permission from Vincent.

    2011-11-07 - Vincent Fourmond <fourmond@debian.org> jalview (2.7.dfsg-2) unstable; urgency=low * Upload to unstable now that jmol is there too * Pull patches/newer-jmol-api.diff from upstream's git repository to make jalview work with jmol currently in unstable.

    2011-10-19 - Vincent Fourmond <fourmond@debian.org> jalview (2.7.dfsg-1) experimental; urgency=low * Initial release (Closes: #507436) * Adding a debian/new-upstream script to repackage the original tarball, getting rid of the bundled precompiled JAR files (I love JAR files) * Using dh 7 and javahelper * Using jh_build for building * Uploading to experimental as it works only with the version of jmol in experimental