chado-utils_1.23-2_all.deb


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Description

chado-utils - tools to add/extract data from Chado

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name chado-utils
Package version 1.23
Package release 2
Package architecture all
Package type deb
Installed size 429 B
Download size 130.62 KB
Official Mirror ftp.br.debian.org
This package contains several tools that can be used to
extract data from Chado database or prepare data before upload.
It is a subset above the Chado database schema and libraries.
Chado is a relational database schema that underlies many GMOD
installations. It is capable of representing many of the general
classes of data frequently encountered in modern biology such as
sequence, sequence comparisons, phenotypes, genotypes, ontologies,
publications, and phylogeny.

Alternatives

Package Version Architecture Repository
chado-utils_1.23-2_all.deb 1.23 all Debian Main
chado-utils - - -

Requires

Name Value
libchado-perl -
perl -

Download

Type URL
Binary Package chado-utils_1.23-2_all.deb
Source Package libchado-perl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install chado-utils deb package:
    # sudo apt-get install chado-utils

Files

Path
/usr/share/doc/chado-utils/changelog.Debian.gz
/usr/share/doc/chado-utils/changelog.gz
/usr/share/doc/chado-utils/copyright
/usr/share/gmod/chado/bin/Skip_tables.pm
/usr/share/gmod/chado/bin/addcascades
/usr/share/gmod/chado/bin/chado-build-schema.pl
/usr/share/gmod/chado/bin/chado-fix-flybase-instance.pl
/usr/share/gmod/chado/bin/create-bridge-sql.pl
/usr/share/gmod/chado/bin/create-so-bridge.pl
/usr/share/gmod/chado/bin/gencode2sql.pl
/usr/share/gmod/chado/bin/gmod_add_organism.pl
/usr/share/gmod/chado/bin/gmod_apollo_triggers.pl
/usr/share/gmod/chado/bin/gmod_bulk_load_gff3.pl
/usr/share/gmod/chado/bin/gmod_bulk_load_pubmed.pl
/usr/share/gmod/chado/bin/gmod_bulkfiles.pl
/usr/share/gmod/chado/bin/gmod_dump_gff3.pl
/usr/share/gmod/chado/bin/gmod_extract_dbxref_from_gff.pl
/usr/share/gmod/chado/bin/gmod_fasta2gff3.pl
/usr/share/gmod/chado/bin/gmod_gff2biomart5.pl
/usr/share/gmod/chado/bin/gmod_gff3_preprocessor.pl
/usr/share/gmod/chado/bin/gmod_load_cvterms.pl
/usr/share/gmod/chado/bin/gmod_make_cvtermpath.pl
/usr/share/gmod/chado/bin/gmod_make_gff_from_dbxref.pl
/usr/share/gmod/chado/bin/gmod_materialized_view_tool.pl
/usr/share/gmod/chado/bin/gmod_sort_gff3.pl
/usr/share/gmod/chado/bin/gmod_update_chado.pl
/usr/share/gmod/chado/bin/interactions2SIF.pl
/usr/share/gmod/chado/bin/load_ncbi_taxonomy.pl
/usr/share/gmod/chado/bin/load_taxonomy_cvterms.pl
/usr/share/gmod/chado/bin/make_cvtermpath.pl
/usr/share/gmod/chado/bin/make_cvtermpath.sh
/usr/share/gmod/chado/bin/make_partial_indexes.pl
/usr/share/gmod/chado/bin/pg2cdbi.pl
/usr/share/gmod/chado/bin/pg2cdbi_viaTT.pl
/usr/share/gmod/chado/bin/pg2diagram.pl
/usr/share/gmod/chado/bin/pg2graphviz.pl
/usr/share/gmod/chado/bin/pg2graphviz_svg.pl
/usr/share/gmod/chado/bin/pg2html.pl
/usr/share/gmod/chado/bin/privileges.tmpl
/usr/share/gmod/chado/bin/ucsc_genes2gff.pl
/usr/share/gmod/chado/bin/ucsc_snp2gff.pl
/usr/share/man/man1/gmod_add_organism.pl.1p.gz
/usr/share/man/man1/gmod_bulk_load_gff3.pl.1p.gz
/usr/share/man/man1/gmod_bulk_load_pubmed.pl.1p.gz
/usr/share/man/man1/gmod_chado_properties.pl.1p.gz
/usr/share/man/man1/gmod_extract_dbxref_from_gff.pl.1p.gz
/usr/share/man/man1/gmod_fasta2gff3.pl.1p.gz
/usr/share/man/man1/gmod_gff3_preprocessor.pl.1p.gz
/usr/share/man/man1/gmod_load_cvterms.pl.1p.gz
/usr/share/man/man1/gmod_make_cvtermpath.pl.1p.gz
/usr/share/man/man1/gmod_make_gff_from_dbxref.pl.1p.gz
/usr/share/man/man1/gmod_materialized_view_tool.pl.1p.gz
/usr/share/man/man1/gmod_sort_gff3.pl.1p.gz

Changelog

See libchado-perl_1.23-2_all.deb changelog.

See Also

Package Description
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charmap.app-common_0.3~rc1-2_all.deb Character map for GNUstep (arch-independent files)
charmap.app_0.3~rc1-2_amd64.deb Character map for GNUstep
charon-cmd_5.2.1-6+deb8u6_amd64.deb standalone IPsec client
charybdis_3.4.2-5+deb8u2_amd64.deb fast, scalable irc server
chase_0.5.2-4_amd64.deb Follow a symlink and print out its target file
chasen-dictutils_2.4.5-12_amd64.deb Japanese Morphological Analysis System - utilities for dictionary
chasen_2.4.5-12_amd64.deb Japanese Morphological Analysis System
check-postgres_2.21.0-3_all.deb script for monitoring PostgreSQL databases
check_0.9.10-6.1_amd64.deb unit test framework for C
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