chado-utils_1.23-2_all.deb


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Description

chado-utils - tools to add/extract data from Chado

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: chado-utils
Package version: 1.23
Package release: 2
Package architecture: all
Package type: deb
Installed size: 429 B
Download size: 130.62 KB
Official Mirror: ftp.br.debian.org
This package contains several tools that can be used to extract data from Chado database or prepare data before upload. It is a subset above the Chado database schema and libraries. Chado is a relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny.

Alternatives

Requires

    Download

    Source package: libchado-perl

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install chado-utils deb package:
      # sudo apt-get install chado-utils

    Files

    • /usr/share/doc/chado-utils/changelog.Debian.gz
    • /usr/share/doc/chado-utils/changelog.gz
    • /usr/share/doc/chado-utils/copyright
    • /usr/share/gmod/chado/bin/Skip_tables.pm
    • /usr/share/gmod/chado/bin/addcascades
    • /usr/share/gmod/chado/bin/chado-build-schema.pl
    • /usr/share/gmod/chado/bin/chado-fix-flybase-instance.pl
    • /usr/share/gmod/chado/bin/create-bridge-sql.pl
    • /usr/share/gmod/chado/bin/create-so-bridge.pl
    • /usr/share/gmod/chado/bin/gencode2sql.pl
    • /usr/share/gmod/chado/bin/gmod_add_organism.pl
    • /usr/share/gmod/chado/bin/gmod_apollo_triggers.pl
    • /usr/share/gmod/chado/bin/gmod_bulk_load_gff3.pl
    • /usr/share/gmod/chado/bin/gmod_bulk_load_pubmed.pl
    • /usr/share/gmod/chado/bin/gmod_bulkfiles.pl
    • /usr/share/gmod/chado/bin/gmod_dump_gff3.pl
    • /usr/share/gmod/chado/bin/gmod_extract_dbxref_from_gff.pl
    • /usr/share/gmod/chado/bin/gmod_fasta2gff3.pl
    • /usr/share/gmod/chado/bin/gmod_gff2biomart5.pl
    • /usr/share/gmod/chado/bin/gmod_gff3_preprocessor.pl
    • /usr/share/gmod/chado/bin/gmod_load_cvterms.pl
    • /usr/share/gmod/chado/bin/gmod_make_cvtermpath.pl
    • /usr/share/gmod/chado/bin/gmod_make_gff_from_dbxref.pl
    • /usr/share/gmod/chado/bin/gmod_materialized_view_tool.pl
    • /usr/share/gmod/chado/bin/gmod_sort_gff3.pl
    • /usr/share/gmod/chado/bin/gmod_update_chado.pl
    • /usr/share/gmod/chado/bin/interactions2SIF.pl
    • /usr/share/gmod/chado/bin/load_ncbi_taxonomy.pl
    • /usr/share/gmod/chado/bin/load_taxonomy_cvterms.pl
    • /usr/share/gmod/chado/bin/make_cvtermpath.pl
    • /usr/share/gmod/chado/bin/make_cvtermpath.sh
    • /usr/share/gmod/chado/bin/make_partial_indexes.pl
    • /usr/share/gmod/chado/bin/pg2cdbi.pl
    • /usr/share/gmod/chado/bin/pg2cdbi_viaTT.pl
    • /usr/share/gmod/chado/bin/pg2diagram.pl
    • /usr/share/gmod/chado/bin/pg2graphviz.pl
    • /usr/share/gmod/chado/bin/pg2graphviz_svg.pl
    • /usr/share/gmod/chado/bin/pg2html.pl
    • /usr/share/gmod/chado/bin/privileges.tmpl
    • /usr/share/gmod/chado/bin/ucsc_genes2gff.pl
    • /usr/share/gmod/chado/bin/ucsc_snp2gff.pl
    • /usr/share/man/man1/gmod_add_organism.pl.1p.gz
    • /usr/share/man/man1/gmod_bulk_load_gff3.pl.1p.gz
    • /usr/share/man/man1/gmod_bulk_load_pubmed.pl.1p.gz
    • /usr/share/man/man1/gmod_chado_properties.pl.1p.gz
    • /usr/share/man/man1/gmod_extract_dbxref_from_gff.pl.1p.gz
    • /usr/share/man/man1/gmod_fasta2gff3.pl.1p.gz
    • /usr/share/man/man1/gmod_gff3_preprocessor.pl.1p.gz
    • /usr/share/man/man1/gmod_load_cvterms.pl.1p.gz
    • /usr/share/man/man1/gmod_make_cvtermpath.pl.1p.gz
    • /usr/share/man/man1/gmod_make_gff_from_dbxref.pl.1p.gz
    • /usr/share/man/man1/gmod_materialized_view_tool.pl.1p.gz
    • /usr/share/man/man1/gmod_sort_gff3.pl.1p.gz

    Changelog

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