cain-solvers_1.9-8_amd64.deb


Advertisement

Description

cain-solvers - simulations of chemical reactions

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name cain-solvers
Package version 1.9
Package release 8
Package architecture amd64
Package type deb
Installed size 7.63 KB
Download size 928.26 KB
Official Mirror ftp.br.debian.org
Cain performs stochastic and deterministic simulations of chemical reactions.
It can spawn multiple simulation processes to utilize multi-core computers.
It stores models, methods, and simulation output (populations and reaction
counts) in an XML format. In addition, SBML models can be imported and
exported. The models and methods can be read from input files or edited
within the program.
The GUI (Graphical User Interface) is written in Python and uses the wxPython
toolkit. Most of the solvers are implemented as command line executables,
written in C++, which are driven by Cain. This makes it easy to launch batch
jobs. It also simplifies the process of adding new solvers. Cain offers a
variety of solvers:
* Gillespie's direct method.
* Gillespie's first reaction method.
* Gibson and Bruck's next reaction method.
* Tau-leaping.
* Hybrid direct/tau-leaping.
* ODE integration.
This package provides the solver libraries

Alternatives

Package Version Architecture Repository
cain-solvers_1.9-8_i386.deb 1.9 i386 Debian Main
cain-solvers - - -

Requires

Name Value
libc6 >= 2.14
libeigen3-dev -
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.6

Download

Type URL
Binary Package cain-solvers_1.9-8_amd64.deb
Source Package cain

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install cain-solvers deb package:
    # sudo apt-get install cain-solvers

Files

Path
/usr/lib/cain/solvers/HomogeneousDirect2DSearch
/usr/lib/cain/solvers/HomogeneousDirect2DSearchBubbleSort
/usr/lib/cain/solvers/HomogeneousDirect2DSearchSorted
/usr/lib/cain/solvers/HomogeneousDirectAllReactions2DSearch
/usr/lib/cain/solvers/HomogeneousDirectBinarySearch
/usr/lib/cain/solvers/HomogeneousDirectBinarySearchRecursiveCdf
/usr/lib/cain/solvers/HomogeneousDirectBinarySearchSorted
/usr/lib/cain/solvers/HomogeneousDirectCompositionRejection
/usr/lib/cain/solvers/HomogeneousDirectLinearSearch
/usr/lib/cain/solvers/HomogeneousDirectLinearSearchBubbleSort
/usr/lib/cain/solvers/HomogeneousDirectLinearSearchDelayedUpdate
/usr/lib/cain/solvers/HomogeneousDirectLinearSearchSorted
/usr/lib/cain/solvers/HomogeneousDirectRejectionBinsSplitting
/usr/lib/cain/solvers/HomogeneousFirstReaction
/usr/lib/cain/solvers/HomogeneousFirstReactionAbsoluteTime
/usr/lib/cain/solvers/HomogeneousFirstReactionInfluence
/usr/lib/cain/solvers/HomogeneousHistogramFinalHypoexponentialDirect2DSearch
/usr/lib/cain/solvers/HomogeneousHistogramsAverage
/usr/lib/cain/solvers/HomogeneousHistogramsAverageAps
/usr/lib/cain/solvers/HomogeneousHistogramsAverageElapsedTime
/usr/lib/cain/solvers/HomogeneousHistogramsDirect2DSearch
/usr/lib/cain/solvers/HomogeneousHistogramsDirectTree
/usr/lib/cain/solvers/HomogeneousHistogramsMultiTimeDirect2DSearch
/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLast
/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLimit
/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit
/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeNormalApproximation
/usr/lib/cain/solvers/HomogeneousHybridDirectTauLeapingForward
/usr/lib/cain/solvers/HomogeneousHybridDirectTauLeapingMidpoint
/usr/lib/cain/solvers/HomogeneousHybridDirectTauLeapingRungeKutta4
/usr/lib/cain/solvers/HomogeneousNextReactionBinaryHeapGibsonBruck
/usr/lib/cain/solvers/HomogeneousNextReactionBinaryHeapPair
/usr/lib/cain/solvers/HomogeneousNextReactionBinaryHeapPointer
/usr/lib/cain/solvers/HomogeneousNextReactionHashing
/usr/lib/cain/solvers/HomogeneousNextReactionHashingGenericList
/usr/lib/cain/solvers/HomogeneousNextReactionHashingGenericVector
/usr/lib/cain/solvers/HomogeneousNextReactionHashingVector
/usr/lib/cain/solvers/HomogeneousNextReactionLinearSearch
/usr/lib/cain/solvers/HomogeneousNextReactionLinearSearchPointer
/usr/lib/cain/solvers/HomogeneousNextReactionLinearSearchUnrolled
/usr/lib/cain/solvers/HomogeneousNextReactionPartitionCostAdaptive
/usr/lib/cain/solvers/HomogeneousNextReactionPartitionFixedSize
/usr/lib/cain/solvers/HomogeneousNextReactionPartitionPropensities
/usr/lib/cain/solvers/HomogeneousNextReactionPartitionSizeAdaptive
/usr/lib/cain/solvers/HomogeneousOdeReactionFixedForward
/usr/lib/cain/solvers/HomogeneousOdeReactionFixedMidpoint
/usr/lib/cain/solvers/HomogeneousOdeReactionFixedRungeKutta4
/usr/lib/cain/solvers/HomogeneousOdeReactionFixedRungeKuttaCashKarp
/usr/lib/cain/solvers/HomogeneousOdeReactionRungeKuttaCashKarp
/usr/lib/cain/solvers/HomogeneousTauLeapingFixedForward
/usr/lib/cain/solvers/HomogeneousTauLeapingFixedMidpoint
/usr/lib/cain/solvers/HomogeneousTauLeapingFixedRungeKutta4
/usr/lib/cain/solvers/HomogeneousTauLeapingForward
/usr/lib/cain/solvers/HomogeneousTauLeapingForwardNoCorrection
/usr/lib/cain/solvers/HomogeneousTauLeapingImplicitFixedEuler
/usr/lib/cain/solvers/HomogeneousTauLeapingMidpoint
/usr/lib/cain/solvers/HomogeneousTauLeapingMidpointNoCorrection
/usr/lib/cain/solvers/HomogeneousTauLeapingRungeKutta4
/usr/lib/cain/solvers/HomogeneousTauLeapingRungeKutta4NoCorrection
/usr/lib/cain/solvers/HomogeneousTauLeapingSalFixedLinear
/usr/lib/cain/solvers/HomogeneousTauLeapingSalLinear
/usr/lib/cain/solvers/HomogeneousTrajectoryTreeFull
/usr/share/cain/solvers
/usr/share/doc/cain-solvers/changelog.Debian.gz
/usr/share/doc/cain-solvers/copyright

Changelog

2014-08-25 - Andreas Tille <tille@debian.org>
cain (1.9-8) unstable; urgency=medium
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* Depends: python-wxgtk3.0 (instead of python-wxgtk2.8)
Closes: #759051
2013-10-14 - Andreas Tille <tille@debian.org>
cain (1.9-7) unstable; urgency=low
* Replace libeigen2-dev by libeigen3-dev.  (Thanks for the patch to
Anton Gladky <gladk@debian.org>)
Closes: #726200
* debian/control:
- cme fix dpkg-control
- Priority: optional
2012-08-16 - Andreas Tille <tille@debian.org>
cain (1.9-6) unstable; urgency=low
* Enable arch only builds (thanks for the patch to Adam Conrad
<adconrad@debian.org>)
Closes: #685066
2012-08-10 - Andreas Tille <tille@debian.org>
cain (1.9-5) unstable; urgency=low
[ Ivo Maintz ]
* debian/rules: remove lots of superfluos files in help/ and gui/
* fixed broken links in the help
LP: #1032304
[ Andreas Tille ]
* debian/control:
- Build-Depends: zip
- Removed quilt from Build-Depends
* debian/rules: use xz compression
2012-05-24 - Andreas Tille <tille@debian.org>
cain (1.9-4) unstable; urgency=low
* debian/rules: Enable binary only builds
Closes: #674235
2012-05-22 - Andreas Tille <tille@debian.org>
cain (1.9-3) unstable; urgency=low
[ Ivo Maintz ]
* added a simple manpage
[ Andreas Tille ]
* debian/upstream: Add publication information
* debian/patches/gcc-4.7.patch: Fix build failure with GCC 4.7.
(Thanks for the patch to Matthias Klose <doko@debian.org>)
Closes: #672045
* debian/patches/*: DEP3 descriptions for patches
* debian/control: Standards-Version: 3.9.3 (no changes needed)
* debhelper 9 (control+compat)
* debian/{dirs,docs}: deleted because unused
* debian/patches/hardening.patch: Propagate hardening flags
* debian/rules: Rewritten to use short dh which finally cares for
the propagation of hardening flags (when doing so use installation
via direct debhelper control files: *.install)
* debian/cain-solvers.{install,links}: install solvers into
usr/lib/cain/solvers rather than usr/lib/solvers
* debian/menu: Use existing menu section
2011-10-13 - Ivo Maintz <ivo@maintz.de>
cain (1.9-2) unstable; urgency=low
* changed the partitioning of the package
2011-09-28 - Ivo Maintz <ivo@maintz.de>
cain (1.9-1) unstable; urgency=low
* New upstream release
2011-09-23 - Ivo Maintz <ivo@maintz.de>
cain (1.8-1) natty; urgency=low
* update from upstream
2011-06-22 - Ivo Maintz <ivo@maintz.de>
cain (1.6-3) natty; urgency=low
* now the solvers are build, too

See Also

Package Description
cain_1.9-8_all.deb simulations of chemical reactions
cairo-clock_0.3.4-2_amd64.deb Analog clock drawn with vector-graphics
cairo-dock-alsamixer-plug-in_3.4.0-1+b1_amd64.deb Alsamixer plug-in for Cairo-dock
cairo-dock-animated-icons-plug-in_3.4.0-1+b1_amd64.deb Animated icons plug-in Cairo-dock
cairo-dock-cairo-penguin-plug-in_3.4.0-1+b1_amd64.deb Cairo-Penguin plug-in for Cairo-dock
cairo-dock-clipper-plug-in_3.4.0-1+b1_amd64.deb Clipper plug-in for Cairo-dock
cairo-dock-clock-plug-in_3.4.0-1+b1_amd64.deb Clock plug-in for Cairo-dock
cairo-dock-core_3.4.0-1_amd64.deb Light eye-candy fully themable animated dock for Linux desktop
cairo-dock-dbus-plug-in-interface-mono_3.4.0-1+b1_amd64.deb library of D-Bus interface for mono of Cairo-dock
cairo-dock-dbus-plug-in-interface-python_3.4.0-1_all.deb library of D-Bus interface for Python of Cairo-dock
cairo-dock-dbus-plug-in-interface-ruby_3.4.0-1_all.deb library of D-Bus interface for ruby of Cairo-dock
cairo-dock-dbus-plug-in-interface-vala_3.4.0-1+b1_amd64.deb library of D-Bus interface for vala of Cairo-dock
cairo-dock-dbus-plug-in_3.4.0-1+b1_amd64.deb Dbus plug-in for Cairo-dock
cairo-dock-desklet-rendering-plug-in_3.4.0-1+b1_amd64.deb Desklet rendering plug-in for Cairo-dock
cairo-dock-dev_3.4.0-1_amd64.deb Cairo-dock develpment file
Advertisement
Advertisement