cain-examples_1.9-8_all.deb


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Description

cain-examples - simulations of chemical reactions

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name cain-examples
Package version 1.9
Package release 8
Package architecture all
Package type deb
Installed size 1.39 KB
Download size 168.59 KB
Official Mirror ftp.br.debian.org
Cain performs stochastic and deterministic simulations of chemical reactions.
It can spawn multiple simulation processes to utilize multi-core computers.
It stores models, methods, and simulation output (populations and reaction
counts) in an XML format. In addition, SBML models can be imported and
exported. The models and methods can be read from input files or edited
within the program.
The GUI (Graphical User Interface) is written in Python and uses the wxPython
toolkit. Most of the solvers are implemented as command line executables,
written in C++, which are driven by Cain. This makes it easy to launch batch
jobs. It also simplifies the process of adding new solvers. Cain offers a
variety of solvers:
* Gillespie's direct method.
* Gillespie's first reaction method.
* Gibson and Bruck's next reaction method.
* Tau-leaping.
* Hybrid direct/tau-leaping.
* ODE integration.
This package provides the cain examples

Alternatives

Package Version Architecture Repository
cain-examples_1.9-8_all.deb 1.9 all Debian Main
cain-examples - - -

Requires

Name Value
cain -

Download

Type URL
Binary Package cain-examples_1.9-8_all.deb
Source Package cain

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install cain-examples deb package:
    # sudo apt-get install cain-examples

Files

Path
/usr/share/cain/examples/cain/Birth.xml
/usr/share/cain/examples/cain/BirthDeath.xml
/usr/share/cain/examples/cain/CaoPetzold2006_Schlogl.xml
/usr/share/cain/examples/cain/Death.xml
/usr/share/cain/examples/cain/DecayingDimerizing.xml
/usr/share/cain/examples/cain/HeatShockResponse.xml
/usr/share/cain/examples/cain/Immigration.xml
/usr/share/cain/examples/cain/ImmigrationDeath.py
/usr/share/cain/examples/cain/ImmigrationDeath.xml
/usr/share/cain/examples/cain/ImmigrationDeathSteadyState.txt
/usr/share/cain/examples/cain/ImmigrationDeathTransient.txt
/usr/share/cain/examples/cain/IrreversibleIsomerization.xml
/usr/share/cain/examples/cain/Kierzek2002_LacZ.xml
/usr/share/cain/examples/cain/Lipshtat2007_ProteinDegradation.xml
/usr/share/cain/examples/cain/Proctor2005_Hsp90.xml
/usr/share/cain/examples/cain/Proctor2007_ubiquitin.xml
/usr/share/cain/examples/cain/SAfSB/Chapter2/Example-2_08-StdMod.xml
/usr/share/cain/examples/cain/SAfSB/Chapter2/Example-2_09-HetDim.xml
/usr/share/cain/examples/cain/SAfSB/Chapter2/Example-2_10-LotVol.xml
/usr/share/cain/examples/cain/SAfSB/Chapter2/Example-2_11-EnzKin.xml
/usr/share/cain/examples/cain/SAfSB/Chapter2/Example-2_12-Schlogl.xml
/usr/share/cain/examples/cain/SAfSB/Chapter2/Example-2_15-GeneReg.xml
/usr/share/cain/examples/cain/SAfSB/Chapter5/Example-5_07-StdMod.xml
/usr/share/cain/examples/cain/SAfSB/Chapter5/Example-5_08-HetDim.xml
/usr/share/cain/examples/cain/SAfSB/Chapter5/Example-5_09-LotVol.xml
/usr/share/cain/examples/cain/SAfSB/Chapter5/Example-5_10-EnzKin.xml
/usr/share/cain/examples/cain/SAfSB/Chapter5/Example-5_12-Schlogl.xml
/usr/share/cain/examples/cain/SAfSB/Chapter5/Example-5_13-GeneReg.xml
/usr/share/cain/examples/cain/WilkinsonSMfSB/autoreg-2-1.xml
/usr/share/cain/examples/cain/WilkinsonSMfSB/ch05-act.xml
/usr/share/cain/examples/cain/WilkinsonSMfSB/ch05-imdeath.xml
/usr/share/cain/examples/cain/WilkinsonSMfSB/ch06-lv.xml
/usr/share/cain/examples/cain/WilkinsonSMfSB/ch07-dimer-stoch.xml
/usr/share/cain/examples/cain/WilkinsonSMfSB/ch07-lac-stoch.xml
/usr/share/cain/examples/cain/WilkinsonSMfSB/ch07-mm-stoch.xml
/usr/share/cain/examples/cain/WilkinsonSMfSB/ch07-mm-stoch2.xml
/usr/share/cain/examples/cain/dsmts23/Readme.txt
/usr/share/cain/examples/cain/dsmts23/dsmts-001-01.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-001-03.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-001-04.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-001-05.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-001-07.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-002-01.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-002-02.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-002-03.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-002-04.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-003-01.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-003-02.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-004-01.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-004-02.xml
/usr/share/cain/examples/cain/dsmts23/dsmts-004-03.xml
/usr/share/cain/examples/cain/dsmts31/convertSolutions.py
/usr/share/cain/examples/cain/dsmts31/dsmts-001-01.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-01.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-02.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-02.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-03.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-03.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-04.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-04.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-05.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-05.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-06.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-06.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-07.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-07.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-08.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-08.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-09.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-09.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-10.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-10.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-11.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-11.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-12.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-12.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-13.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-13.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-14.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-14.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-15.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-15.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-16.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-16.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-17.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-17.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-18.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-001-18.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-001-19.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-01.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-01.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-002-02.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-02.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-002-03.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-04.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-04.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-002-05.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-06.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-07.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-08.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-09.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-09.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-002-10.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-002-10.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-003-01.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-003-01.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-003-02.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-003-02.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-003-03.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-003-03.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-003-04.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-003-04.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-003-05.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-003-05.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-003-06.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-003-06.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-003-07.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-003-07.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-004-01.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-004-01.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-004-02.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-004-02.xml
/usr/share/cain/examples/cain/dsmts31/dsmts-004-03.txt
/usr/share/cain/examples/cain/dsmts31/dsmts-004-03.xml
/usr/share/cain/examples/sbml/WilkinsonSMfSB/autoreg-2-1.xml
/usr/share/cain/examples/sbml/WilkinsonSMfSB/ch05-act.xml
/usr/share/cain/examples/sbml/WilkinsonSMfSB/ch05-imdeath.xml
/usr/share/cain/examples/sbml/WilkinsonSMfSB/ch06-lv.xml
/usr/share/cain/examples/sbml/WilkinsonSMfSB/ch07-dimer-stoch.xml
/usr/share/cain/examples/sbml/WilkinsonSMfSB/ch07-lac-stoch.xml
/usr/share/cain/examples/sbml/WilkinsonSMfSB/ch07-mm-stoch.xml
/usr/share/cain/examples/sbml/WilkinsonSMfSB/ch07-mm-stoch2.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-01.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-02.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-03.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-04.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-05.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-06.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-07.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-08.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-09.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-10.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-11.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-12.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-13.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-14.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-15.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-16.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-17.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-001-18.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-002-01.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-002-02.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-002-03.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-002-04.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-002-05.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-002-06.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-002-07.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-002-08.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-003-01.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-003-02.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-003-03.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-003-04.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-003-05.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-003-06.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-003-07.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-004-01.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-004-02.xml
/usr/share/cain/examples/sbml/dsmts23/dsmts-004-03.xml
/usr/share/cain/examples/sbml/dsmts31/README.txt
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-01-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-01-mean.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-01-sd.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-01-sd.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-01.mod
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-01.xml
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-02-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-02-mean.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-02-sd.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-02-sd.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-02.mod
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-02.xml
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-03-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-03-mean.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-03-sd.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-03-sd.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-03.mod
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-03.xml
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-04-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-04-mean.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-04-sd.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-04-sd.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-04.mod
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-04.xml
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-05-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-05-mean.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-05-sd.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-05-sd.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-05.mod
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-05.xml
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-06-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-06-mean.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-06-sd.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-06-sd.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-06.mod
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-06.xml
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-07-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-07-mean.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-07-sd.csv
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/usr/share/cain/examples/sbml/dsmts31/dsmts-001-09-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-09-mean.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-09-sd.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-09-sd.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-09.mod
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-09.xml
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/usr/share/cain/examples/sbml/dsmts31/dsmts-001-11-mean.csv
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/usr/share/cain/examples/sbml/dsmts31/dsmts-001-12.mod
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/usr/share/cain/examples/sbml/dsmts31/dsmts-001-13-mean.csv
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/usr/share/cain/examples/sbml/dsmts31/dsmts-001-13.mod
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-13.xml
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-14-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-14-mean.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-14-sd.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-14-sd.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-14.mod
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-14.xml
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-15-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-15-mean.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-15-sd.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-15-sd.pdf
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-15.mod
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-15.xml
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-16-mean.csv
/usr/share/cain/examples/sbml/dsmts31/dsmts-001-16-mean.pdf
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/usr/share/cain/examples/sbml/dsmts31/model-list
/usr/share/doc/cain-examples/changelog.Debian.gz
/usr/share/doc/cain-examples/copyright
/usr/share/doc/cain-examples/examples

Changelog

See cain_1.9-8_all.deb changelog.

See Also

Package Description
cain-solvers_1.9-8_amd64.deb simulations of chemical reactions
cain_1.9-8_all.deb simulations of chemical reactions
cairo-clock_0.3.4-2_amd64.deb Analog clock drawn with vector-graphics
cairo-dock-alsamixer-plug-in_3.4.0-1+b1_amd64.deb Alsamixer plug-in for Cairo-dock
cairo-dock-animated-icons-plug-in_3.4.0-1+b1_amd64.deb Animated icons plug-in Cairo-dock
cairo-dock-cairo-penguin-plug-in_3.4.0-1+b1_amd64.deb Cairo-Penguin plug-in for Cairo-dock
cairo-dock-clipper-plug-in_3.4.0-1+b1_amd64.deb Clipper plug-in for Cairo-dock
cairo-dock-clock-plug-in_3.4.0-1+b1_amd64.deb Clock plug-in for Cairo-dock
cairo-dock-core_3.4.0-1_amd64.deb Light eye-candy fully themable animated dock for Linux desktop
cairo-dock-dbus-plug-in-interface-mono_3.4.0-1+b1_amd64.deb library of D-Bus interface for mono of Cairo-dock
cairo-dock-dbus-plug-in-interface-python_3.4.0-1_all.deb library of D-Bus interface for Python of Cairo-dock
cairo-dock-dbus-plug-in-interface-ruby_3.4.0-1_all.deb library of D-Bus interface for ruby of Cairo-dock
cairo-dock-dbus-plug-in-interface-vala_3.4.0-1+b1_amd64.deb library of D-Bus interface for vala of Cairo-dock
cairo-dock-dbus-plug-in_3.4.0-1+b1_amd64.deb Dbus plug-in for Cairo-dock
cairo-dock-desklet-rendering-plug-in_3.4.0-1+b1_amd64.deb Desklet rendering plug-in for Cairo-dock
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