bowtie2-examples_2.2.4-1_all.deb


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Description

bowtie2-examples - Examples for bowtie2

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name bowtie2-examples
Package version 2.2.4
Package release 1
Package architecture all
Package type deb
Installed size 4.73 KB
Download size 4.65 MB
Official Mirror ftp.br.debian.org
An ultrafast and memory-efficient tool for aligning sequencing reads
to long reference sequences. It is particularly good at aligning reads
of about 50 up to 100s or 1,000s of characters, and particularly good
at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
small: for the human genome, its memory footprint is typically
around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
This package provides some example data to work with bowtie2.

Alternatives

Package Version Architecture Repository
bowtie2-examples_2.2.4-1_all.deb 2.2.4 all Debian Main
bowtie2-examples - - -

Download

Type URL
Binary Package bowtie2-examples_2.2.4-1_all.deb
Source Package bowtie2

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install bowtie2-examples deb package:
    # sudo apt-get install bowtie2-examples

Files

Path
/usr/share/doc/bowtie2-examples/changelog.Debian.gz
/usr/share/doc/bowtie2-examples/changelog.gz
/usr/share/doc/bowtie2-examples/copyright
/usr/share/doc/bowtie2/examples/index/lambda_virus.1.bt2.gz
/usr/share/doc/bowtie2/examples/index/lambda_virus.2.bt2
/usr/share/doc/bowtie2/examples/index/lambda_virus.3.bt2
/usr/share/doc/bowtie2/examples/index/lambda_virus.4.bt2.gz
/usr/share/doc/bowtie2/examples/index/lambda_virus.rev.1.bt2.gz
/usr/share/doc/bowtie2/examples/index/lambda_virus.rev.2.bt2
/usr/share/doc/bowtie2/examples/reads/longreads.fq.gz
/usr/share/doc/bowtie2/examples/reads/reads_1.fq.gz
/usr/share/doc/bowtie2/examples/reads/reads_2.fq.gz
/usr/share/doc/bowtie2/examples/reads/simulate.pl.gz
/usr/share/doc/bowtie2/examples/reference/lambda_virus.fa.gz
/usr/share/doc/bowtie2/examples/scripts/convert_quals.pl
/usr/share/doc/bowtie2/examples/scripts/debug_wrapper.pl
/usr/share/doc/bowtie2/examples/scripts/gen_2b_occ_lookup.pl
/usr/share/doc/bowtie2/examples/scripts/gen_occ_lookup.pl.gz
/usr/share/doc/bowtie2/examples/scripts/gen_solqual_lookup.pl
/usr/share/doc/bowtie2/examples/scripts/infer_fraglen.pl.gz
/usr/share/doc/bowtie2/examples/scripts/make_a_thaliana_tair.sh
/usr/share/doc/bowtie2/examples/scripts/make_b_taurus_UMD3.sh
/usr/share/doc/bowtie2/examples/scripts/make_c_elegans.sh
/usr/share/doc/bowtie2/examples/scripts/make_canFam2.sh
/usr/share/doc/bowtie2/examples/scripts/make_d_melanogaster.sh
/usr/share/doc/bowtie2/examples/scripts/make_e_coli.sh
/usr/share/doc/bowtie2/examples/scripts/make_h_sapiens_ncbi36.sh
/usr/share/doc/bowtie2/examples/scripts/make_h_sapiens_ncbi37.sh
/usr/share/doc/bowtie2/examples/scripts/make_hg18.sh
/usr/share/doc/bowtie2/examples/scripts/make_hg19.sh
/usr/share/doc/bowtie2/examples/scripts/make_m_musculus_ncbi37.sh
/usr/share/doc/bowtie2/examples/scripts/make_mm10.sh
/usr/share/doc/bowtie2/examples/scripts/make_mm9.sh
/usr/share/doc/bowtie2/examples/scripts/make_rn4.sh
/usr/share/doc/bowtie2/examples/scripts/make_s_cerevisiae.sh

Changelog

See bowtie2_2.2.4-1_amd64.deb changelog.

See Also

Package Description
bowtie2_2.2.4-1_amd64.deb ultrafast memory-efficient short read aligner
bowtie_1.1.1-2_amd64.deb Ultrafast memory-efficient short read aligner
boxbackup-client_0.11.1~r2837-1_amd64.deb client for the BoxBackup remote backup system
boxbackup-server_0.11.1~r2837-1_amd64.deb server for the BoxBackup remote backup system
boxer-data_6_all.deb classes and nodes usable by Boxer
boxer_0.003-2_all.deb system deployment ninja tricks
boxes_1.1.1-4_amd64.deb textmode box- and comment drawing filter
boxshade_3.3.1-8_amd64.deb Pretty-printing of multiple sequence alignments
bplay_0.991-10_amd64.deb Buffered audio file player/recorder
bpm-tools_0.3-1_amd64.deb command-line tool to calculate tempo of audio
bppphyview_0.3.0-1_amd64.deb Bio++ Phylogenetic Viewer
bpython-gtk_0.12-1.2_all.deb fancy interface to the Python interpreter - GTK+ frontend
bpython-urwid_0.12-1.2_all.deb fancy interface to the Python interpreter - urwid frontend
bpython3_0.12-1.2_all.deb fancy interface to the Python3 interpreter - Curses frontend
bpython_0.12-1.2_all.deb fancy interface to the Python interpreter - Curses frontend
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