bowtie-examples_1.1.1-2_all.deb


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Description

bowtie-examples - Examples for bowtie, the ultrafast memory-efficient short read aligner

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name bowtie-examples
Package version 1.1.1
Package release 2
Package architecture all
Package type deb
Installed size 6.62 KB
Download size 6.02 MB
Official Mirror ftp.br.debian.org
This package addresses the problem to interpret the results from the
latest (2010) DNA sequencing technologies. Those will yield fairly
short stretches and those cannot be interpreted directly. It is the
challenge for tools like Bowtie to give a chromosomal location to the
short stretches of DNA sequenced per run.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate
of over 25 million 35-bp reads per hour. Bowtie indexes the genome with
a Burrows-Wheeler index to keep its memory footprint small: typically
about 2.2 GB for the human genome (2.9 GB for paired-end).
This package provides some example data to work with bowtie.

Alternatives

Package Version Architecture Repository
bowtie-examples_1.1.1-2_all.deb 1.1.1 all Debian Main
bowtie-examples - - -

Download

Type URL
Binary Package bowtie-examples_1.1.1-2_all.deb
Source Package bowtie

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install bowtie-examples deb package:
    # sudo apt-get install bowtie-examples

Files

Path
/usr/share/doc/bowtie-examples/changelog.Debian.gz
/usr/share/doc/bowtie-examples/copyright
/usr/share/doc/bowtie/examples/genomes/NC_008253.fna.gz
/usr/share/doc/bowtie/examples/indexes/e_coli.1.ebwt
/usr/share/doc/bowtie/examples/indexes/e_coli.2.ebwt
/usr/share/doc/bowtie/examples/indexes/e_coli.3.ebwt
/usr/share/doc/bowtie/examples/indexes/e_coli.4.ebwt
/usr/share/doc/bowtie/examples/indexes/e_coli.README
/usr/share/doc/bowtie/examples/indexes/e_coli.rev.1.ebwt
/usr/share/doc/bowtie/examples/indexes/e_coli.rev.2.ebwt

Changelog

See bowtie_1.1.1-2_amd64.deb changelog.

See Also

Package Description
bowtie2-examples_2.2.4-1_all.deb Examples for bowtie2
bowtie2_2.2.4-1_amd64.deb ultrafast memory-efficient short read aligner
bowtie_1.1.1-2_amd64.deb Ultrafast memory-efficient short read aligner
boxbackup-client_0.11.1~r2837-1_amd64.deb client for the BoxBackup remote backup system
boxbackup-server_0.11.1~r2837-1_amd64.deb server for the BoxBackup remote backup system
boxer-data_6_all.deb classes and nodes usable by Boxer
boxer_0.003-2_all.deb system deployment ninja tricks
boxes_1.1.1-4_amd64.deb textmode box- and comment drawing filter
boxshade_3.3.1-8_amd64.deb Pretty-printing of multiple sequence alignments
bplay_0.991-10_amd64.deb Buffered audio file player/recorder
bpm-tools_0.3-1_amd64.deb command-line tool to calculate tempo of audio
bppphyview_0.3.0-1_amd64.deb Bio++ Phylogenetic Viewer
bpython-gtk_0.12-1.2_all.deb fancy interface to the Python interpreter - GTK+ frontend
bpython-urwid_0.12-1.2_all.deb fancy interface to the Python interpreter - urwid frontend
bpython3_0.12-1.2_all.deb fancy interface to the Python3 interpreter - Curses frontend
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