biomaj-properties_1.2.3-4_all.deb


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Description

biomaj-properties - biological data-bank updater - example properties files

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name biomaj-properties
Package version 1.2.3
Package release 4
Package architecture all
Package type deb
Installed size 250 B
Download size 26.58 KB
Official Mirror ftp.br.debian.org
This package contains a set of data bank properties files that can be
used as examples for BioMAJ. It contains descriptions for many existing
data banks with or without workflows to transform data. Some files may
require additional programs (such as BLAST) for post-processing.

Alternatives

Package Version Architecture Repository
biomaj-properties_1.2.3-4_all.deb 1.2.3 all Debian Main
biomaj-properties - - -

Download

Type URL
Binary Package biomaj-properties_1.2.3-4_all.deb
Source Package biomaj

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install biomaj-properties deb package:
    # sudo apt-get install biomaj-properties

Files

Path
/usr/share/biomaj/examples/db_properties/workflow_without_process/Anopheles_gambiae.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Apis_mellifera.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Arabidopsis_thaliana.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Bacteria.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Bos_taurus.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Caenorhabditis_elegans.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Canis_familiaris.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/D_rerio.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Drosophila_melanogaster.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Felis_catus.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Fungi.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Gallus_gallus.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/H_sapiens.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/M_musculus.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Macaca_mulatta.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Monodelphis_domestica.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Pan_troglodytes.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Plasmodium_falciparum.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/R_norvegicus.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Saccharomyces_cerevisiae.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Schizosaccharomyces_pombe.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Strongylocentrotus_purpuratus.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/Tribolium_castaneum.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/alu.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/astral.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/dbest.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/drosoph.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/ecoli.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/env.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/enzyme.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/est.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/genbankRelease.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/geneontology.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/go.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/gss.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/htgs.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/human_genomic.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/human_genomic_transcript.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/igSeq.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/interpro.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/mouse_genomic_transcript.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/nr.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/nt.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/omim.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/other_genomic.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/patent.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/pdb.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/pfam.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/prosite.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/refseq.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/refseqRelease.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/rfam.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/sts.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/swissprot.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/taxonomy.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/tgi.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/unigene.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/uniprot.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/uniref.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/uniref100.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/uniref50.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/uniref90.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/vector.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/wgs.properties
/usr/share/biomaj/examples/db_properties/workflow_without_process/yeast.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Anopheles_gambiae.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Apis_mellifera.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Arabidopsis_thaliana.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Bacteria.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Bos_taurus.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Caenorhabditis_elegans.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Canis_familiaris.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/D_rerio.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Drosophila_melanogaster.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Fungi.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Gallus_gallus.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/H_sapiens.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/M_musculus.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Macaca_mulatta.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Monodelphis_domestica.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Pan_troglodytes.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Plasmodium_falciparum.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/R_norvegicus.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Saccharomyces_cerevisiae.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Schizosaccharomyces_pombe.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Strongylocentrotus_purpuratus.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/Tribolium_castaneum.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/alu.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/astral.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/dbest.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/drosoph.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/ecoli.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/env.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/enzyme.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/est.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/genbankRelease.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/geneontology.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/go.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/gss.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/htgs.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/human_genomic.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/human_genomic_transcript.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/igSeq.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/interpro.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/mouse_genomic_transcript.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/nr.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/nt.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/omim.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/other_genomic.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/patent.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/pdb.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/pfam.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/prosite.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/refseq.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/refseqRelease.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/rfam.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/sts.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/swissprot.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/taxonomy.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/tgi.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/unigene.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/uniprot.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/uniref.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/uniref100.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/uniref50.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/uniref90.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/vector.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/wgs.properties
/usr/share/biomaj/examples/db_properties/workflow_withprocess/yeast.properties
/usr/share/doc/biomaj-properties/changelog.Debian.gz
/usr/share/doc/biomaj-properties/copyright

Changelog

See biomaj_1.2.3-4_all.deb changelog.

See Also

Package Description
biomaj_1.2.3-4_all.deb biological data-bank updater
bioperl-run_1.6.9-2_all.deb BioPerl wrappers: scripts
bioperl_1.6.924-1_all.deb Perl tools for computational molecular biology
biosig-tools_1.3.0-2+b2_amd64.deb format conversion tools for biomedical data formats
biosquid-dev_1.9g+cvs20050121-4_amd64.deb headers and static library for biological sequence analysis
biosquid_1.9g+cvs20050121-4_amd64.deb utilities for biological sequence analysis
bip_0.8.9-1+b1_amd64.deb multiuser irc proxy with conversation replay and more
bird-bgp_1.4.5-1+deb8u1_amd64.deb Internet Routing Daemon [BGP-only version]
bird-doc_1.4.5-1+deb8u1_all.deb Internet Routing Daemon - documentatio
bird6_1.4.5-1+deb8u1_all.deb Internet Routing Daemon [transitional packages]
bird_1.4.5-1+deb8u1_amd64.deb Internet Routing Daemon
birthday_1.6.2-4_amd64.deb Display information about pending events on login
bisho_0.27.2+git20111122.9e68ef3d-2_amd64.deb Meego web services settings
bison++_1.21.11-3.1_amd64.deb Generate a parser in c or c++ from BNF notation
bison_3.0.2.dfsg-2_amd64.deb YACC-compatible parser generator
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