bedtools_2.21.0-1_amd64.deb


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Description

bedtools - suite of utilities for comparing genomic features

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name bedtools
Package version 2.21.0
Package release 1
Package architecture amd64
Package type deb
Installed size 1.89 KB
Download size 593.35 KB
Official Mirror ftp.br.debian.org
The BEDTools utilities allow one to address common genomics tasks such as
finding feature overlaps and computing coverage. The utilities are largely
based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
BEDTools, one can develop sophisticated pipelines that answer complicated
research questions by streaming several BEDTools together.
The groupBy utility is distributed in the filo package.

Alternatives

Package Version Architecture Repository
bedtools_2.21.0-1_i386.deb 2.21.0 i386 Debian Main
bedtools - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.9
zlib1g >= 1:1.2.3.3

Download

Type URL
Binary Package bedtools_2.21.0-1_amd64.deb
Source Package bedtools

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install bedtools deb package:
    # sudo apt-get install bedtools

Files

Path
/etc/bash_completion.d/bedtools
/usr/bin/annotateBed
/usr/bin/bamToBed
/usr/bin/bamToFastq
/usr/bin/bed12ToBed6
/usr/bin/bedToBam
/usr/bin/bedToIgv
/usr/bin/bedpeToBam
/usr/bin/bedtools
/usr/bin/closestBed
/usr/bin/clusterBed
/usr/bin/complementBed
/usr/bin/coverageBed
/usr/bin/expandCols
/usr/bin/fastaFromBed
/usr/bin/flankBed
/usr/bin/genomeCoverageBed
/usr/bin/getOverlap
/usr/bin/intersectBed
/usr/bin/linksBed
/usr/bin/mapBed
/usr/bin/maskFastaFromBed
/usr/bin/mergeBed
/usr/bin/multiBamCov
/usr/bin/multiIntersectBed
/usr/bin/nucBed
/usr/bin/pairToBed
/usr/bin/pairToPair
/usr/bin/randomBed
/usr/bin/shuffleBed
/usr/bin/slopBed
/usr/bin/sortBed
/usr/bin/subtractBed
/usr/bin/tagBam
/usr/bin/unionBedGraphs
/usr/bin/windowBed
/usr/bin/windowMaker
/usr/share/bedtools/genomes/human.hg18.genome
/usr/share/bedtools/genomes/human.hg19.genome
/usr/share/bedtools/genomes/human.hg38.genome
/usr/share/bedtools/genomes/mouse.mm10.genome.txt
/usr/share/bedtools/genomes/mouse.mm8.genome
/usr/share/bedtools/genomes/mouse.mm9.genome
/usr/share/doc/bedtools/README.md
/usr/share/doc/bedtools/changelog.Debian.gz
/usr/share/doc/bedtools/changelog.gz
/usr/share/doc/bedtools/copyright

Changelog

2014-09-23 - Charles Plessy <plessy@debian.org>
bedtools (2.21.0-1) unstable; urgency=medium
856a5fd Merge tag 'v2.21.0' into debian/unstable
a4f6ab7 Merge corrections on version number.
2014-06-06 - Andreas Tille <tille@debian.org>
bedtools (2.20.1-1) unstable; urgency=medium
* New upstream version
* Fix permission of some genome example files
2014-05-09 - Andreas Tille <tille@debian.org>
bedtools (2.19.1-2) unstable; urgency=medium
* debian/tests/control: Add "Depends: @, samtools" as advised in
#747337
* debian/tests/upstream: Use content from bedtools-test package to
actually run the test suite
Closes: #747337
* debian/rules: Use dh to easily enable unit tests at package build
time
* Build-Depends: samtools to run the full test suite
2014-03-21 - Charles Plessy <plessy@debian.org>
bedtools (2.19.1-1) unstable; urgency=medium
479e63b Merge tag 'v2.19.1' into debian/unstable
[ Charles Plessy ]
93a7cf1 Create autopkgtest testsuite and a new package bedtools-test.
46183f8 debian/copyright: update path, correct license short name.
4fd441a debian/rules: removed obsolete exception of compression.
[ James McCoy ]
b4fa8e1 Move debian/upstream to debian/upstream/metadata
2014-02-15 - Charles Plessy <plessy@debian.org>
bedtools (2.19.0-1) unstable; urgency=low
e07e70c Imported Upstream version 2.19.0
afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
4abe14e Source control file normalised with config-model-edit.
0518353 Corrected a typo in the long description. (Closes: #714873)
f63d85e Follow the layout of the upstream repository.
c25f9e5 Correct name of README file in debian/docs.
5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
a45a0ab Canonical VCS URLs.
4459dfe Conforms with Policy 3.9.5.
2012-11-04 - Charles Plessy <plessy@debian.org>
bedtools (2.17.0-1) unstable; urgency=low
bb9012e Imported Upstream version 2.16.2.
9006b23 Imported Upstream version 2.17.0.
9112569 Documented BEDTools license as a whole.
325689c Removed Pre-Depends: dpkg (>= 1.15.6).
a781b14 Conforms with Policy 3.9.4.
84b1167 Use Debhelper 9.
0bf572d Distribute the test suite.
422cd34 Bash completion for BEDTools.
2012-03-16 - Charles Plessy <plessy@debian.org>
bedtools (2.16.1-1) unstable; urgency=low
b7f2405 New upstream release.
4add346 Corrected, updated and normalised Debian copyright.
00b426d Conforms to Debian Policy 3.9.3.
72c3c94 Verbose Debhelper.
2012-01-11 - Charles Plessy <plessy@debian.org>
bedtools (2.15.0-1) unstable; urgency=low
3f8e754 Upstream version 2.15.0.
f27b295 Build-depend on python because of scripts/makeBashScripts.py.
2e3e8e8 Removed the /usr/bin/groupBy wrapper, as groupBy is also
distributed by the filo package.
2011-11-04 - Charles Plessy <plessy@debian.org>
bedtools (2.14.3-1) unstable; urgency=low
04f6aa3 Bugfix release.
2011-11-03 - Charles Plessy <plessy@debian.org>
bedtools (2.14.2-1) unstable; urgency=low
356313d Bugfix release.

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