arden_1.0-1_amd64.deb


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Description

arden - specificity control for read alignments using an artificial reference

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name arden
Package version 1.0
Package release 1
Package architecture amd64
Package type deb
Installed size 1.13 KB
Download size 88.39 KB
Official Mirror ftp.br.debian.org
ARDEN (Artificial Reference Driven Estimation of false positives in NGS
data) is a novel benchmark that estimates error rates based on real
experimental reads and an additionally generated artificial reference
genome. It allows the computation of error rates specifically for a
dataset and the construction of a ROC-curve. Thereby, it can be used to
optimize parameters for read mappers, to select read mappers for a
specific problem or also to filter alignments based on quality
estimation.

Alternatives

Package Version Architecture Repository
arden_1.0-1_i386.deb 1.0 i386 Debian Main
arden - - -

Requires

Name Value
python-htseq -
python-matplotlib -
python-numpy -
python-scipy -
python:any >= 2.6.6-7~

Download

Type URL
Binary Package arden_1.0-1_amd64.deb
Source Package arden

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install arden deb package:
    # sudo apt-get install arden

Files

Path
/usr/bin/arden-analyze
/usr/bin/arden-create
/usr/bin/arden-filter
/usr/share/arden/arden-analyze
/usr/share/arden/arden-create
/usr/share/arden/arden-filter
/usr/share/arden/core/AnalyseMapping.py
/usr/share/arden/core/FindOrfs.py
/usr/share/arden/core/InsertMutations.py
/usr/share/arden/core/PlotData.py
/usr/share/arden/core/Prep.py
/usr/share/arden/core/ReadAndWrite.py
/usr/share/arden/core/__init__.py
/usr/share/doc-base/arden
/usr/share/doc/arden/changelog.Debian.gz
/usr/share/doc/arden/copyright
/usr/share/doc/arden/html/api-objects.txt.gz
/usr/share/doc/arden/html/class-tree.html
/usr/share/doc/arden/html/core-module.html
/usr/share/doc/arden/html/core-pysrc.html
/usr/share/doc/arden/html/core.AnalyseMapping-module.html
/usr/share/doc/arden/html/core.AnalyseMapping-pysrc.html
/usr/share/doc/arden/html/core.AnalyseMapping.CustomRead-class.html
/usr/share/doc/arden/html/core.AnalyseMapping.ReadID-class.html
/usr/share/doc/arden/html/core.AnalyseMapping.TPRead-class.html
/usr/share/doc/arden/html/core.FindOrfs-module.html
/usr/share/doc/arden/html/core.FindOrfs-pysrc.html
/usr/share/doc/arden/html/core.InsertMutations-module.html
/usr/share/doc/arden/html/core.InsertMutations-pysrc.html
/usr/share/doc/arden/html/core.Mem-module.html
/usr/share/doc/arden/html/core.Mem-pysrc.html
/usr/share/doc/arden/html/core.PlotData-module.html
/usr/share/doc/arden/html/core.PlotData-pysrc.html
/usr/share/doc/arden/html/core.Prep-pysrc.html
/usr/share/doc/arden/html/core.ReadAndWrite-pysrc.html
/usr/share/doc/arden/html/core.insert_mutations-module.html
/usr/share/doc/arden/html/core.orfs-module.html
/usr/share/doc/arden/html/core.prep-module.html
/usr/share/doc/arden/html/core.readandwrite-module.html
/usr/share/doc/arden/html/crarr.png
/usr/share/doc/arden/html/epydoc.css
/usr/share/doc/arden/html/epydoc.js
/usr/share/doc/arden/html/frames.html
/usr/share/doc/arden/html/help.html
/usr/share/doc/arden/html/identifier-index.html
/usr/share/doc/arden/html/index.html
/usr/share/doc/arden/html/module-tree.html
/usr/share/doc/arden/html/redirect.html
/usr/share/doc/arden/html/script-arden_analyze-module.html
/usr/share/doc/arden/html/script-arden_create-module.html
/usr/share/doc/arden/html/script-arden_filter-module.html
/usr/share/doc/arden/html/toc-core-module.html
/usr/share/doc/arden/html/toc-core.AnalyseMapping-module.html
/usr/share/doc/arden/html/toc-core.FindOrfs-module.html
/usr/share/doc/arden/html/toc-core.InsertMutations-module.html
/usr/share/doc/arden/html/toc-core.Mem-module.html
/usr/share/doc/arden/html/toc-core.PlotData-module.html
/usr/share/doc/arden/html/toc-core.ReadAndWrite-module.html
/usr/share/doc/arden/html/toc-core.insert_mutations-module.html
/usr/share/doc/arden/html/toc-core.orfs-module.html
/usr/share/doc/arden/html/toc-core.prep-module.html
/usr/share/doc/arden/html/toc-everything.html
/usr/share/doc/arden/html/toc-script-arden_analyze-module.html
/usr/share/doc/arden/html/toc-script-arden_create-module.html
/usr/share/doc/arden/html/toc-script-arden_filter-module.html
/usr/share/doc/arden/html/toc.html
/usr/share/man/man1/arden-analyze.1.gz
/usr/share/man/man1/arden-create.1.gz
/usr/share/man/man1/arden-filter.1.gz
/usr/share/python/runtime.d/arden.rtupdate

Changelog

2014-02-07 - Andreas Tille <tille@debian.org>
arden (1.0-1) unstable; urgency=low
* Initial release (Closes: #738039)

See Also

Package Description
ardentryst_1.71-5_all.deb Action/RPG sidescoller, focused on story and character development
ardour3_3.5.403~dfsg-3_amd64.deb digital audio workstation (graphical gtk2 interface)
ardour_2.8.16+git20131003+dfsg1-1~deb8u1_amd64.deb digital audio workstation (graphical gtk2 interface)
arduino-core_1.0.5+dfsg2-4_all.deb Code, examples, and libraries for the Arduino platform
arduino-mighty-1284p_1-2_all.deb Platform files for Arduino to run on ATmega1284P
arduino-mk_1.3.4-1_all.deb Program your Arduino from the command line
arduino_1.0.5+dfsg2-4_all.deb AVR development board IDE and built-in libraries
arename_4.0-2_all.deb automatic audio file renaming tool
argonaut-client_0.9.1-4_all.deb Argonaut JSON-RPC client to manage computers and services
argonaut-common-fai_0.9.1-4_all.deb Argonaut (common library for FAI)
argonaut-common_0.9.1-4_all.deb Argonaut (common functions and libraries)
argonaut-dovecot_0.9.1-4_all.deb Argonaut (client-module for dovecot)
argonaut-fai-mirror_0.9.1-4_all.deb (Argonaut (scripts to manage Debian mirrors)
argonaut-fai-nfsroot_0.9.1-4_all.deb Argonaut (tools, queues and status management)
argonaut-fai-server_0.9.1-4_all.deb Argonaut (scripts to enable Argonaut integration with FAI)
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