anfo_0.98-4+b1_amd64.deb


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Description

anfo - Short Read Aligner/Mapper from MPG

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name anfo
Package version 0.98
Package release 4+b1
Package architecture amd64
Package type deb
Installed size 387 B
Download size 116.52 KB
Official Mirror ftp.br.debian.org
Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes
more after BLAST/BLAT. It's most useful for the alignment of sequencing reads
where the DNA sequence is somehow modified (think ancient DNA or bisulphite
treatment) and/or there is more divergence between sample and reference than
what fast mappers will handle gracefully (say the reference genome is missing
and a related species is used instead).

Alternatives

Package Version Architecture Repository
anfo_0.98-4+b1_i386.deb 0.98 i386 Debian Main
anfo - - -

Requires

Name Value
libanfo0 -
libbz2-1.0 -
libc6 >= 2.14
libelk0 -
libgcc1 >= 1:4.1.1
libpopt0 >= 1.14
libprotobuf9 -
libstdc++6 >= 4.9
zlib1g >= 1:1.1.4

Download

Type URL
Binary Package anfo_0.98-4+b1_amd64.deb
Source Package anfo

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install anfo deb package:
    # sudo apt-get install anfo

Files

Path
/usr/bin/anfo
/usr/bin/anfo-tool
/usr/bin/dnaindex
/usr/bin/fa2dna
/usr/lib/x86_64-linux-gnu/file-info
/usr/lib/x86_64-linux-gnu/index-test
/usr/share/anfo/config.proto
/usr/share/anfo/output.proto
/usr/share/doc/anfo/README.Debian
/usr/share/doc/anfo/README.gz
/usr/share/doc/anfo/changelog.Debian.amd64.gz
/usr/share/doc/anfo/changelog.Debian.gz
/usr/share/doc/anfo/copyright
/usr/share/doc/anfo/example/ancient.cfg
/usr/share/doc/anfo/example/default.cfg
/usr/share/doc/anfo/example/split-anfo.scm
/usr/share/doc/anfo/example/threebam.scm
/usr/share/elk/anfo.scm
/usr/share/elk/srfi-88.scm
/usr/share/elk/srfi-89.scm
/usr/share/man/man1/anfo-tool.1.gz
/usr/share/man/man1/anfo.1.gz
/usr/share/man/man1/dnaindex.1.gz
/usr/share/man/man1/fa2dna.1.gz
/usr/share/man/man1/file-info.1.gz

Changelog

2014-02-08 - Andreas Tille <tille@debian.org>
anfo (0.98-4) unstable; urgency=medium
* Add hint from upstream to README.Debian
* debian/rules: Add additional override for libprotobuf8-dev
Closes: #737883
2014-01-08 - Andreas Tille <tille@debian.org>
anfo (0.98-3) unstable; urgency=medium
[ Andreas Tille ]
* Initial upload to Debian (Closes: #734638)
* fixed watch file
* debian/control:
- cme fix dpkg-control
- Priority: optional
- debhelper 9
- canonical Vcs fields
* debian/copyright: DEP5
* use autoreconf (including necessary patches)
* Create additional library packages
* debian/anfo.1: Check out manpage from upstream git
repository
* debian/upstream: Add link to upstream repository
[ Gert Wollny ]
* debian/patches/*: Patches to build with latest gcc
2014-01-08 - Tim Booth <tbooth@ceh.ac.uk>
anfo (0.98-2biolinux1) precise; urgency=low
* Build for Bio-Linux 7
2011-08-11 - Tim Booth <tbooth@ceh.ac.uk>
anfo (0.98-1ubuntu4) lucid; urgency=low
* Add zlib, bzlib, pkg-config, protobuf-compiler build deps. 
2011-08-11 - Tim Booth <tbooth@ceh.ac.uk>
anfo (0.98-1ubuntu1) lucid; urgency=low
* Fix some minor permission issue.
* Move to Lucid
2011-08-11 - Tim Booth <tbooth@ceh.ac.uk>
anfo (0.98-1) unstable; urgency=low
* Initial release. Doesn't close any ITP bug.

See Also

Package Description
angband-data_3.3.2-2.1_all.deb Game data for angband
angband-doc_3.0.3.5_all.deb Documentation for the roguelike game Angband
angband_3.3.2-2.1_amd64.deb Single-player, text-based, dungeon simulation game
angrydd_1.0.1-10_all.deb Angry Drunken Dwarves - falling blocks puzzle game
animals_201207131226-1+b1_amd64.deb Traditional AI animal guessing engine using a binary tree DB
anjuta-common_3.14.0-1_all.deb GNOME development IDE, for C/C++ - data files
anjuta-extras_3.10.0-3_amd64.deb plugins and extras for anjuta
anjuta_3.14.0-1_amd64.deb GNOME development IDE, for C/C++
anki_2.0.31+dfsg-1_all.deb extensible flashcard learning program
ann-tools_1.1.2+doc-5_amd64.deb Approximate Nearest Neighbor Searching library (tools)
anomaly_1.1.0-3_amd64.deb detect anomalous data in a numeric stream
ansible-doc_1.7.2+dfsg-2_all.deb Ansible documentation and examples
ansible-fireball_1.7.2+dfsg-2_all.deb Ansible fireball transport support
ansible-node-fireball_1.7.2+dfsg-2_all.deb Ansible fireball transport support for nodes
ansible_1.7.2+dfsg-2_all.deb Configuration management, deployment, and task execution system
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