amap-align_2.2-4_amd64.deb


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Description

amap-align - Protein multiple alignment by sequence annealing

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name amap-align
Package version 2.2
Package release 4
Package architecture amd64
Package type deb
Installed size 319 B
Download size 129.23 KB
Official Mirror ftp.br.debian.org
AMAP is a command line tool to perform multiple alignment of peptidic
sequences. It utilizes posterior decoding, and a sequence-annealing
alignment, instead of the traditional progressive alignment method. It is
the only alignment program that allows one to control the sensitivity /
specificity tradeoff.  It is based on the ProbCons source code, but
uses alignment metric accuracy and eliminates the consistency
transformation.
The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.

Alternatives

Package Version Architecture Repository
amap-align_2.2-4_i386.deb 2.2 i386 Debian Main
amap-align - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.6

Download

Type URL
Binary Package amap-align_2.2-4_amd64.deb
Source Package amap-align

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install amap-align deb package:
    # sudo apt-get install amap-align

Files

Path
/usr/bin/amap
/usr/share/doc/amap-align/NEWS.Debian.gz
/usr/share/doc/amap-align/PROBCONS.README
/usr/share/doc/amap-align/README
/usr/share/doc/amap-align/README.Debian
/usr/share/doc/amap-align/changelog.Debian.gz
/usr/share/doc/amap-align/copyright
/usr/share/doc/amap-align/examples/BB12020.tfa
/usr/share/doc/amap-align/examples/BB12020.tfa.out.gz
/usr/share/man/man1/amap.1.gz

Changelog

2013-11-14 - Andreas Tille <tille@debian.org>
amap-align (2.2-4) unstable; urgency=low
* debian/README.Debian: Mentioning that latest source is not available
online any more
* debian/source/format: 3.0 (quilt)
* debian/upstream: Add citation information
* debian/control:
- cme fix dpkg-control
- canonical Vcs fields
- debhelper 9
* remove unneeded amap-align wrapper as announced previously (NEWS)
* debian/patches/hardening.patch: Propagate hardening options
2011-05-02 - Andreas Tille <tille@debian.org>
amap-align (2.2-3) unstable; urgency=low
* Standards-Version: 3.9.2 (no changes needed)
* Debhelper 8 (compat+control)
* debian/patches/fix-gcc-4.6.diff: Fix gcc-4.6 build error
Closes: #624990
2011-01-13 - Andreas Tille <tille@debian.org>
amap-align (2.2-2) unstable; urgency=low
[ Charles Plessy ]
* Updated my email address.
[ David Paleino ]
* debian/control: removed myself from Uploaders
[ Andreas Tille ]
* debian/control:
- Standards-Version: 3.9.1 (no changes needed)
- Debhelper 7
- Fixed Debian Med spelling in maintainer address
- Commented Homepage which simply vanished and added a hint
about dead upstream
* debian/watch: deactivated useless code because the donwload area
vanished
* debian/copyright: Mention missing homepage / download
* debian/rules:
- s/dh_clean -k/dh_prep/
- fix permissions of example which should not be executable
* debian/README.{Debian,source}: added some information
2008-04-10 - Charles Plessy <charles-debian-nospam@plessy.org>
amap-align (2.2-1) unstable; urgency=low
[ Charles Plessy ]
* New upstream release:
- Corrected DNA alignment parameters file. Improved debug output. (2.01)
- Includes new output for the AMAP Display Java based GUI. (2.1)
* debian/amap.1, debian/amap.1.xml: updated the manpage.
* debian/watch: changed URI to monitor.
* debian/patches, debian/rules, debian/control: switched to quilt.
* debian/patches/fix-gcc-4.3.diff: updated for version 2.2 (Closes: #468060).
* debian/control:
- Moved the 'Conflicts:' field from the source to the binary section.
2008-02-20 - Andreas Tille <tille@debian.org>
amap-align (2.0-3) unstable; urgency=low
[ Charles Plessy ]
* Moved the Homepage: field out from the package's description.
[ David Paleino ]
* debian/amap.1 - the manpage is now generated offline: this saves
buildd time and B-D space.
* debian/control:
- XS-Vcs-* fields moved to Vcs-* and fixed
- added myself to Uploaders
- B-D fixed (see above)
- Using DM-Upload-Allowed instead of the XS- version
* debian/rules - minor changes
[ Andreas Tille ]
* Added myself as uploader
* Reformatted debian/NEWS according to Developers Reference,
section 6.3.4
2007-03-17 - Charles Plessy <charles-debian-nospam@plessy.org>
amap-align (2.0-2) unstable; urgency=low
* Added Subversion repository URL to debian/control.
* Patched for building with gcc-4.3. Many thanks to Martin Michlmayr (Closes:413477)
* Renamed /usr/bin/amap-align to /usr/bin/amap, providing a wrapper for
compatibility.
* Included /usr/share/dpatch/dpatch.make in debian/rules.
* Improved manpage using the template of docbook-xsl 1.71.0.dfsg.1-1.1.
* Fixed double-building in debian/rules.
2006-07-09 - Charles Plessy <charles-debian-nospam@plessy.org>
amap-align (2.0-1) unstable; urgency=low
* Initial release Closes: #366321

See Also

Package Description
amarok-common_2.8.0-2.1_all.deb architecture independent files for Amarok
amarok-doc_2.8.0-2.1_all.deb Amarok documentation (Handbook)
amarok-utils_2.8.0-2.1+b1_amd64.deb utilities for Amarok media player
amarok_2.8.0-2.1+b1_amd64.deb easy to use media player based on the KDE Platform
amavisd-milter_1.5.0-5_amd64.deb amavisd-new interface for milter-capable MTAs
amavisd-new_2.10.1-2~deb8u1_all.deb Interface between MTA and virus scanner/content filters
amb-plugins_0.8.1-4_amd64.deb ambisonics LADPSA plugins
ambdec_0.5.1-3_amd64.deb Ambisonic decoder for first and second order
amide_1.0.5-2+b2_amd64.deb software for Medical Imaging
amideco_0.31e-3.1_amd64.deb Decompress flashfiles equipped with an AMI BIOS
amiga-fdisk-cross_0.04-15_amd64.deb Partition editor for Amiga partitions (cross version)
amispammer_3.3-1_all.deb Powerful Mail Server checker on blacklists
amoebax-data_0.2.1+dfsg-2_all.deb Data files for amoebax
amoebax_0.2.1+dfsg-2_amd64.deb Puyo Puyo-style puzzle game for up to two players
amor_4.13.3-1_amd64.deb desktop companion
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