altree_1.3.1-2+b1_amd64.deb


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Description

altree - program to perform phylogeny-based association and localization analysis

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name altree
Package version 1.3.1
Package release 2+b1
Package architecture amd64
Package type deb
Installed size 519 B
Download size 332.87 KB
Official Mirror ftp.br.debian.org
ALTree was designed to perform association detection and localization of
susceptibility sites using haplotype phylogenetic trees: first, it allows the
detection of an association between a candidate gene and a disease, and second,
it enables to make hypothesis about the susceptibility loci.

Alternatives

Package Version Architecture Repository
altree_1.3.1-2+b1_i386.deb 1.3.1 i386 Debian Main
altree - - -

Requires

Name Value
libatlas3-base -
libc6 >= 2.4
libgsl0ldbl >= 1.9
libmath-tamuanova-perl -
perl >= 5.20.0-4
perlapi-5.20.0 -

Provides

Name Value
alphy -
libcutils-perl -

Conflicts

Name Value
alphy -
libcutils-perl -

Replaces

Name Value
alphy -
libcutils-perl -

Download

Type URL
Binary Package altree_1.3.1-2+b1_amd64.deb
Source Package altree

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install altree deb package:
    # sudo apt-get install altree

Files

Path
/usr/bin/altree
/usr/bin/altree-add-S
/usr/bin/altree-convert
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Base.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/CUtils.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Chi2.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Foret.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Import.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Input.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Nanova.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Node.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Sens.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Site.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/SiteCollection.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/SitePerForet.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/SitePerTree.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/SiteSens.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/SiteSensPerForet.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/SiteSensPerTree.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Tree.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/Utils.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/ALTree/to_rewrite.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/auto/ALTree/CUtils/CUtils.so
/usr/lib/x86_64-linux-gnu/perl5/5.20/auto/ALTree/CUtils/autosplit.ix
/usr/share/doc-base/altree
/usr/share/doc/altree/README
/usr/share/doc/altree/changelog.Debian.amd64.gz
/usr/share/doc/altree/changelog.Debian.gz
/usr/share/doc/altree/changelog.gz
/usr/share/doc/altree/copyright
/usr/share/doc/altree/manual.pdf
/usr/share/man/man1/altree-add-S.1p.gz
/usr/share/man/man1/altree-convert.1p.gz
/usr/share/man/man1/altree.1p.gz
/usr/share/man/man3/ALTree::CUtils.3pm.gz

Changelog

2014-03-30 - Vincent Danjean <vdanjean@debian.org>
altree (1.3.1-2) unstable; urgency=medium
* Fix "FTBFS with clang instead of gcc" 
clang does not support nested functions so removing them.
Instead of inlining the nested function as proposed in the submitted
patch (thanks Arthur <arthur@info9.net>), use a external function
with an explicit context (Closes: #742843)
* bump standard-version (no change needed)
2013-12-13 - Vincent Danjean <vdanjean@debian.org>
altree (1.3.1-1) unstable; urgency=low
* New upstream release
+ fix a SEGV when ALTREE_PARALLEL is used with more processors
than requested permutations (-r program parameter)
+ Fix "FTBFS with perl 5.12.0-1: long doubles" (Closes: #578550)
* debian/control:
Add B-D on libtest-deep-perl (required when fixing 578550)
2013-11-22 - Vincent Danjean <vdanjean@debian.org>
altree (1.3.0-1) unstable; urgency=low
* New upstream release
+ Mostly performance improvment
* debian/control:
+ bump Standard-Version (no change needed)
+ put canonical vcs fields
+ remove outdated DM-Upload-Allowed field
+ improve altree-examples long description
+ add libgsl0-dev and libatlas-base-dev as new build-dependency
+ remove libpdl-stats-perl as (build-)dependency
2012-06-09 - Vincent Danjean <vdanjean@debian.org>
altree (1.2.1-1) unstable; urgency=low
[ Andreas Tille ]
* debian/upstream: Add eprint
* debian/reference: Removed in favour of debian/upstream
[ Vincent Danjean ]
* New (stable) upstream release 1.2.1
* debian/{README.Debian,watch}: No need to skip old last version 1.1.1
* debian/patches/*: latex bug fixed upstream
2012-04-22 - Andreas Tille <tille@debian.org>
altree (1.0.1-7) unstable; urgency=low
[ Thorsten Alteholz ]
* debian/rules: target get-orig-source added
[ Charles Plessy ]
* Renamed debian/upstream-metadata.yaml to debian/upstream
[ Andreas Tille ]
* debian/upstream: Single Reference field instead of Reference-*
* debian/watch: Do not download version 1.1.1 as the author has
asked for in
http://lists.debian.org/debian-med/2009/08/msg00104.html
* debian/README.Debian: Document the "do not package new version"
issue
* debian/control: Standards-Version: 3.9.3 (no changes needed)
* debian/changelog: Verified DEP5 using
cme fix dpkg-copyright
* debian/patches/build-with-recent-tetex.patch: Drop dvips option
Closes: #669551
* debhelper 9 (control+compat)
2011-09-27 - Charles Plessy <plessy@debian.org>
altree (1.0.1-5) unstable; urgency=low
* Upload source package without 3.0 (quilt) autopatch leftover.
Closes: #643045. 
* Corrected VCS URLs in debian/control.
* Use Debhelper 8 (debian/control, debian/compat). 
* Converted debian/copyright to machine-readable format 1.0 (DEP 5).
* Compress binary packages with xz (debian/rules).
* Conforms with Policy 3.9.2 (debian/control, no other changes needed).

See Also

Package Description
alure-doc_1.2-6_all.deb AL Utilities REtooled (documentation)
alure-utils_1.2-6_amd64.deb AL Utilities REtooled (utilities)
am-utils-doc_6.2+rc20110530-3.2_all.deb automounter utilities documentation
am-utils_6.2+rc20110530-3.2_amd64.deb automounter utilities from 4.4BSD (includes amd)
amanda-client_3.3.6-4_amd64.deb Advanced Maryland Automatic Network Disk Archiver (Client)
amanda-common_3.3.6-4_amd64.deb Advanced Maryland Automatic Network Disk Archiver (Libs)
amanda-server_3.3.6-4_amd64.deb Advanced Maryland Automatic Network Disk Archiver (Server)
amap-align_2.2-4_amd64.deb Protein multiple alignment by sequence annealing
amarok-common_2.8.0-2.1_all.deb architecture independent files for Amarok
amarok-doc_2.8.0-2.1_all.deb Amarok documentation (Handbook)
amarok-utils_2.8.0-2.1+b1_amd64.deb utilities for Amarok media player
amarok_2.8.0-2.1+b1_amd64.deb easy to use media player based on the KDE Platform
amavisd-milter_1.5.0-5_amd64.deb amavisd-new interface for milter-capable MTAs
amavisd-new_2.10.1-2~deb8u1_all.deb Interface between MTA and virus scanner/content filters
amb-plugins_0.8.1-4_amd64.deb ambisonics LADPSA plugins
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