alien-hunter_1.7-3_all.deb


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Description

alien-hunter - Interpolated Variable Order Motifs to identify horizontally acquired DNA

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name alien-hunter
Package version 1.7
Package release 3
Package architecture all
Package type deb
Installed size 120 B
Download size 27.22 KB
Official Mirror ftp.br.debian.org
Alien_hunter is an application for the prediction of putative
Horizontal Gene Transfer (HGT) events with the implementation of
Interpolated Variable Order Motifs (IVOMs). An IVOM approach
exploits compositional biases using variable order motif distributions
and captures more reliably the local composition of a sequence compared
to fixed-order methods. Optionally the predictions can be parsed into a
2-state 2nd order Hidden Markov Model (HMM), in a change-point detection
framework, to optimize the localization of the boundaries of the
predicted regions. The predictions (embl format) can be automatically
loaded into Artemis genome viewer freely available at:
http://www.sanger.ac.uk/Software/Artemis/.

Alternatives

Package Version Architecture Repository
alien-hunter_1.7-3_all.deb 1.7 all Debian Main
alien-hunter - - -

Requires

Name Value
libbiojava-java -
libbytecode-java -
libcommons-cli-java -
libcommons-collections3-java -
libcommons-dbcp-java -
libcommons-pool-java -

Download

Type URL
Binary Package alien-hunter_1.7-3_all.deb
Source Package alien-hunter

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install alien-hunter deb package:
    # sudo apt-get install alien-hunter

Files

Path
/usr/bin/alien_hunter
/usr/share/alien_hunter/ChangepointLeft$1.class
/usr/share/alien_hunter/ChangepointLeft.class
/usr/share/alien_hunter/ChangepointRight$1.class
/usr/share/alien_hunter/ChangepointRight.class
/usr/share/alien_hunter/alien_hunter.pl
/usr/share/doc/alien-hunter/changelog.Debian.gz
/usr/share/doc/alien-hunter/copyright
/usr/share/doc/alien-hunter/examples/demoSeq.dna.gz
/usr/share/man/man1/alien_hunter.1.gz
/usr/share/perl5/changepointCaller.pm
/usr/share/perl5/PAI_scripts/CutOff.pm
/usr/share/perl5/PAI_scripts/MotifMaker.pm
/usr/share/perl5/PAI_scripts/changePoint.pm
/usr/share/perl5/PAI_scripts/help.pm
/usr/share/perl5/PAI_scripts/overlap.pm
/usr/share/perl5/PAI_scripts/rrna.pm

Changelog

2014-04-11 - Andreas Tille <tille@debian.org>
alien-hunter (1.7-3) unstable; urgency=medium
* debian/upstream moved to debian/upstream/metadata
* cme fix dpkg-control
* replace libcommons-collections-java by libcommons-collections3-java
Closes: #744209
2013-09-12 - Andreas Tille <tille@debian.org>
alien-hunter (1.7-2) unstable; urgency=low
[ Charles Plessy ]
* Documented information in ‘debian/upstream’.
* Removed mention of the bibliographic reference in ‘debian/control’.
* Updated homepage (debian/control).
[ Andreas Tille ]
* debian/upstream: Removed duplicated information, reordering
* debian/copyright: DEP5
* debian/source/format: 3.0 (quilt)
* debian/control:
- cme fix dpkg-control
- debhelper 9
- anonscm in Vcs fields
- drop quilt from Build-Depends
2009-10-14 - Andreas Tille <tille@debian.org>
alien-hunter (1.7-1) unstable; urgency=low
* Initial release (Closes: #550954)

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