embassy-phylip_3.69+20110714-1_amd64.deb


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Description

embassy-phylip - EMBOSS conversions of the programs in the phylip package

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Nonfree amd64
Package name embassy-phylip
Package version 3.69+20110714
Package release 1
Package architecture amd64
Package type deb
Installed size 6.20 KB
Download size 2.41 MB
Official Mirror ftp.br.debian.org
This package is the adaptation of the PHYLIP package in which its
programs can operate with the biological sequence formats and databases
of the European Molecular Biology Open Software Suite (EMBOSS). The
software packages adapted for EMBOSS are called EMBASSY.
PHYLIP (the PHYLogeny Inference Package) is a package of programs for
inferring phylogenies (evolutionary trees). Methods that are available
in the package include parsimony, distance matrix, and likelihood
methods, including bootstrapping and consensus trees. Data types that
can be handled include molecular sequences, gene frequencies,
restriction sites and fragments, distance matrices, and discrete
characters.
The EMBASSY PHYLIP programs all have the prefix "f" to distinguish them
from the original programs and avoid namespace conflict.

Alternatives

Package Version Architecture Repository
embassy-phylip - - -

Requires

Name Value
emboss-lib >= 6.4.0-1~
emboss-lib << 6.4.1~
libc6 >= 2.7
libx11-6 -
libxaw7 -
libxt6 -

Download

Type URL
Binary Package embassy-phylip_3.69+20110714-1_amd64.deb
Source Package embassy-phylip

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install embassy-phylip deb package:
    # sudo apt-get install embassy-phylip

Files

Path
/usr/bin/fclique
/usr/bin/fconsense
/usr/bin/fcontml
/usr/bin/fcontrast
/usr/bin/fdiscboot
/usr/bin/fdnacomp
/usr/bin/fdnadist
/usr/bin/fdnainvar
/usr/bin/fdnaml
/usr/bin/fdnamlk
/usr/bin/fdnamove
/usr/bin/fdnapars
/usr/bin/fdnapenny
/usr/bin/fdollop
/usr/bin/fdolmove
/usr/bin/fdolpenny
/usr/bin/fdrawgram
/usr/bin/fdrawtree
/usr/bin/ffactor
/usr/bin/ffitch
/usr/bin/ffreqboot
/usr/bin/fgendist
/usr/bin/fkitsch
/usr/bin/fmix
/usr/bin/fmove
/usr/bin/fneighbor
/usr/bin/fpars
/usr/bin/fpenny
/usr/bin/fproml
/usr/bin/fpromlk
/usr/bin/fprotdist
/usr/bin/fprotpars
/usr/bin/frestboot
/usr/bin/frestdist
/usr/bin/frestml
/usr/bin/fretree
/usr/bin/fseqboot
/usr/bin/fseqbootall
/usr/bin/ftreedist
/usr/bin/ftreedistpair
/usr/share/EMBOSS/acd/fclique.acd
/usr/share/EMBOSS/acd/fconsense.acd
/usr/share/EMBOSS/acd/fcontml.acd
/usr/share/EMBOSS/acd/fcontrast.acd
/usr/share/EMBOSS/acd/fdiscboot.acd
/usr/share/EMBOSS/acd/fdnacomp.acd
/usr/share/EMBOSS/acd/fdnadist.acd
/usr/share/EMBOSS/acd/fdnainvar.acd
/usr/share/EMBOSS/acd/fdnaml.acd
/usr/share/EMBOSS/acd/fdnamlk.acd
/usr/share/EMBOSS/acd/fdnamove.acd
/usr/share/EMBOSS/acd/fdnapars.acd
/usr/share/EMBOSS/acd/fdnapenny.acd
/usr/share/EMBOSS/acd/fdollop.acd
/usr/share/EMBOSS/acd/fdolmove.acd
/usr/share/EMBOSS/acd/fdolpenny.acd
/usr/share/EMBOSS/acd/fdrawgram.acd
/usr/share/EMBOSS/acd/fdrawtree.acd
/usr/share/EMBOSS/acd/ffactor.acd
/usr/share/EMBOSS/acd/ffitch.acd
/usr/share/EMBOSS/acd/ffreqboot.acd
/usr/share/EMBOSS/acd/fgendist.acd
/usr/share/EMBOSS/acd/fkitsch.acd
/usr/share/EMBOSS/acd/fmix.acd
/usr/share/EMBOSS/acd/fmove.acd
/usr/share/EMBOSS/acd/fneighbor.acd
/usr/share/EMBOSS/acd/fpars.acd
/usr/share/EMBOSS/acd/fpenny.acd
/usr/share/EMBOSS/acd/fproml.acd
/usr/share/EMBOSS/acd/fpromlk.acd
/usr/share/EMBOSS/acd/fprotdist.acd
/usr/share/EMBOSS/acd/fprotpars.acd
/usr/share/EMBOSS/acd/frestboot.acd
/usr/share/EMBOSS/acd/frestdist.acd
/usr/share/EMBOSS/acd/frestml.acd
/usr/share/EMBOSS/acd/fretree.acd
/usr/share/EMBOSS/acd/fseqboot.acd
/usr/share/EMBOSS/acd/fseqbootall.acd
/usr/share/EMBOSS/acd/ftreedist.acd
/usr/share/EMBOSS/acd/ftreedistpair.acd
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fclique.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fconsense.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fcontml.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fcontrast.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdiscboot.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnacomp.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnadist.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnainvar.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnaml.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnamlk.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnamove.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnapars.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnapenny.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdollop.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdolmove.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdolpenny.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdrawgram.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fdrawtree.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/ffactor.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/ffitch.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/ffreqboot.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fgendist.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fkitsch.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fmix.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fmove.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fneighbor.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fpars.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fpenny.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fproml.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fpromlk.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fprotdist.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fprotpars.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/frestboot.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/frestdist.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/frestml.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fretree.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fseqboot.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/fseqbootall.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/ftreedist.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/ftreedistpair.html
/usr/share/EMBOSS/doc/html/embassy/phylipnew/index.html
/usr/share/EMBOSS/doc/programs/text/fclique.txt
/usr/share/EMBOSS/doc/programs/text/fconsense.txt
/usr/share/EMBOSS/doc/programs/text/fcontml.txt
/usr/share/EMBOSS/doc/programs/text/fcontrast.txt
/usr/share/EMBOSS/doc/programs/text/fdiscboot.txt
/usr/share/EMBOSS/doc/programs/text/fdnacomp.txt
/usr/share/EMBOSS/doc/programs/text/fdnadist.txt
/usr/share/EMBOSS/doc/programs/text/fdnainvar.txt
/usr/share/EMBOSS/doc/programs/text/fdnaml.txt
/usr/share/EMBOSS/doc/programs/text/fdnamlk.txt
/usr/share/EMBOSS/doc/programs/text/fdnamove.txt
/usr/share/EMBOSS/doc/programs/text/fdnapars.txt
/usr/share/EMBOSS/doc/programs/text/fdnapenny.txt
/usr/share/EMBOSS/doc/programs/text/fdollop.txt
/usr/share/EMBOSS/doc/programs/text/fdolmove.txt
/usr/share/EMBOSS/doc/programs/text/fdolpenny.txt
/usr/share/EMBOSS/doc/programs/text/fdrawgram.txt
/usr/share/EMBOSS/doc/programs/text/fdrawtree.txt
/usr/share/EMBOSS/doc/programs/text/ffactor.txt
/usr/share/EMBOSS/doc/programs/text/ffitch.txt
/usr/share/EMBOSS/doc/programs/text/ffreqboot.txt
/usr/share/EMBOSS/doc/programs/text/fgendist.txt
/usr/share/EMBOSS/doc/programs/text/fkitsch.txt
/usr/share/EMBOSS/doc/programs/text/fmix.txt
/usr/share/EMBOSS/doc/programs/text/fmove.txt
/usr/share/EMBOSS/doc/programs/text/fneighbor.txt
/usr/share/EMBOSS/doc/programs/text/fpars.txt
/usr/share/EMBOSS/doc/programs/text/fpenny.txt
/usr/share/EMBOSS/doc/programs/text/fproml.txt
/usr/share/EMBOSS/doc/programs/text/fpromlk.txt
/usr/share/EMBOSS/doc/programs/text/fprotdist.txt
/usr/share/EMBOSS/doc/programs/text/fprotpars.txt
/usr/share/EMBOSS/doc/programs/text/frestboot.txt
/usr/share/EMBOSS/doc/programs/text/frestdist.txt
/usr/share/EMBOSS/doc/programs/text/frestml.txt
/usr/share/EMBOSS/doc/programs/text/fretree.txt
/usr/share/EMBOSS/doc/programs/text/fseqboot.txt
/usr/share/EMBOSS/doc/programs/text/fseqbootall.txt
/usr/share/EMBOSS/doc/programs/text/ftreedist.txt
/usr/share/EMBOSS/doc/programs/text/ftreedistpair.txt
/usr/share/PHYLIPNEW/data/font1
/usr/share/PHYLIPNEW/data/font2
/usr/share/PHYLIPNEW/data/font3
/usr/share/PHYLIPNEW/data/font4
/usr/share/PHYLIPNEW/data/font5
/usr/share/PHYLIPNEW/data/font6
/usr/share/doc/embassy-phylip/ChangeLog
/usr/share/doc/embassy-phylip/README
/usr/share/doc/embassy-phylip/changelog.Debian.gz
/usr/share/doc/embassy-phylip/changelog.gz
/usr/share/doc/embassy-phylip/copyright
/usr/share/lintian/overrides/embassy-phylip
/usr/share/man/man1/fclique.1e.gz
/usr/share/man/man1/fconsense.1e.gz
/usr/share/man/man1/fcontml.1e.gz
/usr/share/man/man1/fcontrast.1e.gz
/usr/share/man/man1/fdiscboot.1e.gz
/usr/share/man/man1/fdnacomp.1e.gz
/usr/share/man/man1/fdnadist.1e.gz
/usr/share/man/man1/fdnainvar.1e.gz
/usr/share/man/man1/fdnaml.1e.gz
/usr/share/man/man1/fdnamlk.1e.gz
/usr/share/man/man1/fdnamove.1e.gz
/usr/share/man/man1/fdnapars.1e.gz
/usr/share/man/man1/fdnapenny.1e.gz
/usr/share/man/man1/fdollop.1e.gz
/usr/share/man/man1/fdolmove.1e.gz
/usr/share/man/man1/fdolpenny.1e.gz
/usr/share/man/man1/fdrawgram.1e.gz
/usr/share/man/man1/fdrawtree.1e.gz
/usr/share/man/man1/ffactor.1e.gz
/usr/share/man/man1/ffitch.1e.gz
/usr/share/man/man1/ffreqboot.1e.gz
/usr/share/man/man1/fgendist.1e.gz
/usr/share/man/man1/fkitsch.1e.gz
/usr/share/man/man1/fmix.1e.gz
/usr/share/man/man1/fmove.1e.gz
/usr/share/man/man1/fneighbor.1e.gz
/usr/share/man/man1/fpars.1e.gz
/usr/share/man/man1/fpenny.1e.gz
/usr/share/man/man1/fproml.1e.gz
/usr/share/man/man1/fpromlk.1e.gz
/usr/share/man/man1/fprotdist.1e.gz
/usr/share/man/man1/fprotpars.1e.gz
/usr/share/man/man1/frestboot.1e.gz
/usr/share/man/man1/frestdist.1e.gz
/usr/share/man/man1/frestml.1e.gz
/usr/share/man/man1/fretree.1e.gz
/usr/share/man/man1/fseqboot.1e.gz
/usr/share/man/man1/fseqbootall.1e.gz
/usr/share/man/man1/ftreedist.1e.gz
/usr/share/man/man1/ftreedistpair.1e.gz

Changelog

2012-07-04 - Andreas Tille <tille@debian.org>
embassy-phylip (3.69+20110714-1) unstable; urgency=low
* New upstream version
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- debhelper version 9
- Adapted versioned (build-)depends to latest emboss version
* debian/compat: 9
* debian/source/format: 3.0 (quilt)
* debian/rules: short dh
* debian/embassy-phylip.lintian-overrides: Handle false positive when
detecting the string "GPL" inside debian/copyright
2011-05-12 - Charles Plessy <plessy@debian.org>
embassy-phylip (3.69+20100721-3) unstable; urgency=low
* Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore.
(debian/rules) LP: #770835.
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
* Updated debian/embassy-phylip.lintian-overrides for lintian 2.5.
* debian/copyright validated with config-edit.
2010-09-23 - Charles Plessy <plessy@debian.org>
embassy-phylip (3.69+20100721-2) unstable; urgency=low
* Built on emboss-lib 6.3.1-6, pre-emptively depending on versions
lower than 6.3.2, because backwards compatibility is sometimes
broken (debian/control, debian/rules).
* Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private
libraries (debian/rules, debian/embassy-phylip.lintian-overrides).
* Refreshed debian/copyright to test the latest DEP-5 format.
2010-08-11 - Charles Plessy <plessy@debian.org>
embassy-phylip (3.69+20100721-1) unstable; urgency=low
* New upstream release in which the version number was unchanged.
* Build-Depends on emboss 6.3.1 (debian/control, debian/rules).
* Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed.
* Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules).
* Incremented Standards-Version to reflect conformance with Policy 3.9.1
(debian/control, no changes needed).
2010-06-01 - Charles Plessy <plessy@debian.org>
embassy-phylip (3.69-1) unstable; urgency=low
* New upstream release.
* debian/control:
- Corrected Vcs-Browser URL.
- Incremented Standards-Version to reflect conformance with Policy 3.8.4
(no changes needed).
* Refreshed the manual pages (Debian-specific).
2009-08-08 - Charles Plessy <plessy@debian.org>
embassy-phylip (3.68-1) unstable; urgency=low
* Initial release (Closes: #493977)

See Also

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fatrat-unpack_1.1.3-2_amd64.deb non-free fatrat plugin for unpacking archives inside the application
festlex-oald_1.4.0-3.1_all.deb Festival lexicon from Oxford Advanced Learners' Dictionary
festvox-ellpc11k_1.4.0-3_all.deb Castilian Spanish male speaker for Festival
fglrx-atieventsd_12-6+point-3_amd64.deb external events daemon for the non-free ATI/AMD RadeonHD display driver
fglrx-control_12-6+point-3_amd64.deb control panel for the non-free ATI/AMD RadeonHD display driver
fglrx-driver_12-6+point-3_amd64.deb non-free ATI/AMD RadeonHD display driver
fglrx-glx-ia32_12-6+point-3_amd64.deb please switch to multiarch libgl1-fglrx-glx:i386
fglrx-glx_12-6+point-3_amd64.deb transitional package, use libgl1-fglrx-glx
fglrx-modules-dkms_12-6+point-3_amd64.deb dkms module source for the non-free ATI/AMD RadeonHD display driver
fglrx-source_12-6+point-3_amd64.deb kernel module source for the non-free ATI/AMD RadeonHD display driver
firmware-atheros_0.36+wheezy.1_all.deb Binary firmware for Atheros wireless cards
firmware-bnx2_0.36+wheezy.1_all.deb Binary firmware for Broadcom NetXtremeII
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