viewmol_2.4.1-18_i386.deb


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Description

viewmol - A graphical front end for computational chemistry programs

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Main i386
Package name viewmol
Package version 2.4.1
Package release 18
Package architecture i386
Package type deb
Installed size 5.77 KB
Download size 2.13 MB
Official Mirror ftp.br.debian.org
Viewmol is a graphical front end for computational chemistry programs.
It is able to graphically aid in the generation of molecular structures for
computations and to visualize their results.
At present Viewmol includes input filters for Discover, DMol3, Gamess,
Gaussian 9x/03, Gulp, Mopac, PQS, Turbomole, and Vamp outputs as well as
for PDB files. Structures can be saved as Accelrys' car-files, MDL files,
and Turbomole coordinate files. Viewmol can generate input files for
Gaussian 9x/03. Viewmol's file format has been added to OpenBabel so that
OpenBabel can serve as an input as well as an output filter for
coordinates.

Alternatives

Package Version Architecture Repository
viewmol_2.4.1-18_amd64.deb 2.4.1 amd64 Debian Main
viewmol - - -

Requires

Name Value
lesstif2 >= 1:0.94.4
libc6 >= 2.7
libgl1 -
libgl1-mesa-glx -
libglu1 -
libglu1-mesa -
libpng12-0 >= 1.2.13-4
libpython2.7 >= 2.7
libtiff5 >> 4.0.0-1~
libx11-6 -
libxi6 -
libxmu6 -
libxt6 -
python >= 2.6.6-7~

Download

Type URL
Binary Package viewmol_2.4.1-18_i386.deb
Source Package viewmol

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install viewmol deb package:
    # sudo apt-get install viewmol

Files

Path
/etc/viewmol/viewmolrc
/etc/viewmol/locale/de/Viewmol
/etc/viewmol/locale/en/Viewmol
/etc/viewmol/locale/es/Viewmol
/etc/viewmol/locale/fr/Viewmol
/etc/viewmol/locale/hu/Viewmol
/etc/viewmol/locale/pl/Viewmol
/etc/viewmol/locale/ru/Viewmol
/etc/viewmol/locale/tr/Viewmol
/usr/bin/viewmol
/usr/lib/viewmol/doc
/usr/lib/viewmol/examples
/usr/lib/viewmol/locale
/usr/lib/viewmol/readdmol
/usr/lib/viewmol/readdmol.awk
/usr/lib/viewmol/readgulp
/usr/lib/viewmol/readpqs
/usr/lib/viewmol/scripts
/usr/lib/viewmol/tests
/usr/lib/viewmol/viewmolrc
/usr/lib/viewmol/writecar
/usr/lib/viewmol/writegauss.py
/usr/lib/viewmol/writemol
/usr/lib/viewmol/writetm
/usr/lib/viewmol/Linux/bio
/usr/lib/viewmol/Linux/readgamess
/usr/lib/viewmol/Linux/readgauss
/usr/lib/viewmol/Linux/readmopac
/usr/lib/viewmol/Linux/readpdb
/usr/lib/viewmol/Linux/tm
/usr/share/applications/viewmol.desktop
/usr/share/doc-base/viewmol
/usr/share/doc/viewmol/README.Debian
/usr/share/doc/viewmol/README.gz
/usr/share/doc/viewmol/changelog.Debian.gz
/usr/share/doc/viewmol/copyright
/usr/share/doc/viewmol/examples
/usr/share/doc/viewmol/tests
/usr/share/doc/viewmol/viewmol-2.4.1-1.spec.gz
/usr/share/doc/viewmol/viewmol.html
/usr/share/doc/viewmol/viewmol.pdf.gz
/usr/share/doc/viewmol/html/blueball.png
/usr/share/doc/viewmol/html/bondform.png
/usr/share/doc/viewmol/html/cellform.png
/usr/share/doc/viewmol/html/coloreditor.png
/usr/share/doc/viewmol/html/configurationform.png
/usr/share/doc/viewmol/html/content.html
/usr/share/doc/viewmol/html/crossref.png
/usr/share/doc/viewmol/html/cyclohexane.png
/usr/share/doc/viewmol/html/downarrow.png
/usr/share/doc/viewmol/html/error.png
/usr/share/doc/viewmol/html/historyform.png
/usr/share/doc/viewmol/html/img38.png
/usr/share/doc/viewmol/html/img39.png
/usr/share/doc/viewmol/html/img40.png
/usr/share/doc/viewmol/html/img41.png
/usr/share/doc/viewmol/html/img42.png
/usr/share/doc/viewmol/html/img43.png
/usr/share/doc/viewmol/html/img44.png
/usr/share/doc/viewmol/html/img45.png
/usr/share/doc/viewmol/html/img46.png
/usr/share/doc/viewmol/html/img47.png
/usr/share/doc/viewmol/html/img48.png
/usr/share/doc/viewmol/html/img49.png
/usr/share/doc/viewmol/html/img50.png
/usr/share/doc/viewmol/html/img51.png
/usr/share/doc/viewmol/html/img52.png
/usr/share/doc/viewmol/html/img53.png
/usr/share/doc/viewmol/html/img54.png
/usr/share/doc/viewmol/html/img55.png
/usr/share/doc/viewmol/html/img56.png
/usr/share/doc/viewmol/html/img57.png
/usr/share/doc/viewmol/html/img58.png
/usr/share/doc/viewmol/html/img59.png
/usr/share/doc/viewmol/html/img60.png
/usr/share/doc/viewmol/html/img61.png
/usr/share/doc/viewmol/html/img62.png
/usr/share/doc/viewmol/html/img63.png
/usr/share/doc/viewmol/html/img64.png
/usr/share/doc/viewmol/html/img65.png
/usr/share/doc/viewmol/html/leftarrow.png
/usr/share/doc/viewmol/html/modesform.png
/usr/share/doc/viewmol/html/moform.png
/usr/share/doc/viewmol/html/mouse.png
/usr/share/doc/viewmol/html/newman.png
/usr/share/doc/viewmol/html/node0.html
/usr/share/doc/viewmol/html/node1.html
/usr/share/doc/viewmol/html/node10.html
/usr/share/doc/viewmol/html/node11.html
/usr/share/doc/viewmol/html/node12.html
/usr/share/doc/viewmol/html/node13.html
/usr/share/doc/viewmol/html/node14.html
/usr/share/doc/viewmol/html/node15.html
/usr/share/doc/viewmol/html/node16.html
/usr/share/doc/viewmol/html/node17.html
/usr/share/doc/viewmol/html/node18.html
/usr/share/doc/viewmol/html/node19.html
/usr/share/doc/viewmol/html/node2.html
/usr/share/doc/viewmol/html/node20.html
/usr/share/doc/viewmol/html/node21.html
/usr/share/doc/viewmol/html/node22.html
/usr/share/doc/viewmol/html/node23.html
/usr/share/doc/viewmol/html/node24.html
/usr/share/doc/viewmol/html/node25.html
/usr/share/doc/viewmol/html/node26.html
/usr/share/doc/viewmol/html/node27.html
/usr/share/doc/viewmol/html/node28.html
/usr/share/doc/viewmol/html/node29.html
/usr/share/doc/viewmol/html/node3.html
/usr/share/doc/viewmol/html/node30.html
/usr/share/doc/viewmol/html/node31.html
/usr/share/doc/viewmol/html/node32.html
/usr/share/doc/viewmol/html/node33.html
/usr/share/doc/viewmol/html/node34.html
/usr/share/doc/viewmol/html/node35.html
/usr/share/doc/viewmol/html/node36.html
/usr/share/doc/viewmol/html/node37.html
/usr/share/doc/viewmol/html/node38.html
/usr/share/doc/viewmol/html/node39.html
/usr/share/doc/viewmol/html/node4.html
/usr/share/doc/viewmol/html/node5.html
/usr/share/doc/viewmol/html/node6.html
/usr/share/doc/viewmol/html/node7.html
/usr/share/doc/viewmol/html/node8.html
/usr/share/doc/viewmol/html/node9.html
/usr/share/doc/viewmol/html/orangeball.png
/usr/share/doc/viewmol/html/printform.png
/usr/share/doc/viewmol/html/pseform.png
/usr/share/doc/viewmol/html/rightarrow.png
/usr/share/doc/viewmol/html/setatomcolors.png
/usr/share/doc/viewmol/html/spectrumform.png
/usr/share/doc/viewmol/html/thermoform.png
/usr/share/doc/viewmol/html/uparrow.png
/usr/share/doc/viewmol/html/viewmol.css
/usr/share/doc/viewmol/html/viewmol.png
/usr/share/doc/viewmol/html/waveform1.png
/usr/share/doc/viewmol/html/waveform2.png
/usr/share/doc/viewmol/html/writegauss.png
/usr/share/icons/crystalsvg/128x128/apps/viewmol.png
/usr/share/icons/crystalsvg/128x128/mimetypes/molecule.png
/usr/share/icons/crystalsvg/128x128/mimetypes/qc.png
/usr/share/icons/crystalsvg/128x128/mimetypes/solid.png
/usr/share/icons/crystalsvg/32x32/apps/viewmol.png
/usr/share/icons/crystalsvg/32x32/mimetypes/molecule.png
/usr/share/icons/crystalsvg/32x32/mimetypes/qc.png
/usr/share/icons/crystalsvg/32x32/mimetypes/solid.png
/usr/share/icons/crystalsvg/48x48/apps/viewmol.png
/usr/share/icons/crystalsvg/48x48/mimetypes/molecule.png
/usr/share/icons/crystalsvg/48x48/mimetypes/qc.png
/usr/share/icons/crystalsvg/48x48/mimetypes/solid.png
/usr/share/icons/crystalsvg/64x64/apps/viewmol.png
/usr/share/icons/crystalsvg/64x64/mimetypes/molecule.png
/usr/share/icons/crystalsvg/64x64/mimetypes/qc.png
/usr/share/icons/crystalsvg/64x64/mimetypes/solid.png
/usr/share/man/man1/viewmol.1.gz
/usr/share/menu/viewmol
/usr/share/mimelnk/x-dmol.desktop
/usr/share/mimelnk/x-gamess-output.desktop
/usr/share/mimelnk/x-gaussian-log.desktop
/usr/share/mimelnk/x-gulp.desktop
/usr/share/mimelnk/x-mopac.desktop
/usr/share/mimelnk/x-msi-car.desktop
/usr/share/mimelnk/x-msi-hessian.desktop
/usr/share/mimelnk/x-msi-mdf.desktop
/usr/share/mimelnk/x-msi-msi.desktop
/usr/share/mimelnk/x-pdb.desktop
/usr/share/mimelnk/x-pqs-output.desktop
/usr/share/mimelnk/x-turbomole-basis.desktop
/usr/share/mimelnk/x-turbomole-control.desktop
/usr/share/mimelnk/x-turbomole-coord.desktop
/usr/share/mimelnk/x-turbomole-grad.desktop
/usr/share/mimelnk/x-turbomole-scfmo.desktop
/usr/share/mimelnk/x-turbomole-vibrational.desktop
/usr/share/pixmaps/viewmol.png
/usr/share/python/runtime.d/viewmol.rtupdate
/usr/share/viewmol/readdmol
/usr/share/viewmol/readdmol.awk
/usr/share/viewmol/readgulp
/usr/share/viewmol/readpqs
/usr/share/viewmol/writecar
/usr/share/viewmol/writegauss.py
/usr/share/viewmol/writemol
/usr/share/viewmol/writetm
/usr/share/viewmol/examples/discover/benzene.cor
/usr/share/viewmol/examples/discover/benzene.hessian
/usr/share/viewmol/examples/dmol/quartz.outmol
/usr/share/viewmol/examples/dmol/quartz_homo.grd
/usr/share/viewmol/examples/dmol/quartz_lumo.grd
/usr/share/viewmol/examples/gamess/c10h8n2.out
/usr/share/viewmol/examples/gaussian/h2o.log
/usr/share/viewmol/examples/gaussian/methanol.log
/usr/share/viewmol/examples/gaussian/mmdc1.log
/usr/share/viewmol/examples/gulp/urea.out
/usr/share/viewmol/examples/mopac/adamantane.gpt
/usr/share/viewmol/examples/mopac/adamantane.out
/usr/share/viewmol/examples/pdb/fau1.pdb
/usr/share/viewmol/examples/pdb/gpc.pdb
/usr/share/viewmol/examples/pdb/octa.pdb
/usr/share/viewmol/examples/pqs/cpcpm.out
/usr/share/viewmol/examples/reaction/h2o.outmol
/usr/share/viewmol/examples/reaction/hio3.outmol
/usr/share/viewmol/examples/reaction/hno3.outmol
/usr/share/viewmol/examples/reaction/i2.outmol
/usr/share/viewmol/examples/reaction/no.outmol
/usr/share/viewmol/examples/turbomole/basis
/usr/share/viewmol/examples/turbomole/control
/usr/share/viewmol/examples/turbomole/coord
/usr/share/viewmol/examples/turbomole/gradient
/usr/share/viewmol/examples/turbomole/mos
/usr/share/viewmol/locale/de/Viewmol
/usr/share/viewmol/locale/de/LC_MESSAGES/Viewmol.mo
/usr/share/viewmol/locale/de/LC_MESSAGES/Viewmol.po
/usr/share/viewmol/locale/en/Viewmol
/usr/share/viewmol/locale/en/LC_MESSAGES/Viewmol.mo
/usr/share/viewmol/locale/en/LC_MESSAGES/Viewmol.po
/usr/share/viewmol/locale/es/Viewmol
/usr/share/viewmol/locale/es/LC_MESSAGES/Viewmol.mo
/usr/share/viewmol/locale/es/LC_MESSAGES/Viewmol.po
/usr/share/viewmol/locale/fr/Viewmol
/usr/share/viewmol/locale/fr/LC_MESSAGES/Viewmol.mo
/usr/share/viewmol/locale/fr/LC_MESSAGES/Viewmol.po
/usr/share/viewmol/locale/hu/Viewmol
/usr/share/viewmol/locale/hu/LC_MESSAGES/Viewmol.mo
/usr/share/viewmol/locale/hu/LC_MESSAGES/Viewmol.po
/usr/share/viewmol/locale/pl/Viewmol
/usr/share/viewmol/locale/pl/LC_MESSAGES/Viewmol.mo
/usr/share/viewmol/locale/pl/LC_MESSAGES/Viewmol.po
/usr/share/viewmol/locale/ru/Viewmol
/usr/share/viewmol/locale/ru/LC_MESSAGES/Viewmol.mo
/usr/share/viewmol/locale/ru/LC_MESSAGES/Viewmol.po
/usr/share/viewmol/locale/tr/Viewmol
/usr/share/viewmol/locale/tr/LC_MESSAGES/Viewmol.mo
/usr/share/viewmol/locale/tr/LC_MESSAGES/Viewmol.po
/usr/share/viewmol/scripts/demo.py
/usr/share/viewmol/scripts/setAtomColors.py
/usr/share/viewmol/scripts/template.py
/usr/share/viewmol/scripts/uff.py
/usr/share/viewmol/tests/autotest.py
/usr/share/viewmol/tests/importtest.py

Changelog

2012-06-03 - Drew Parsons <dparsons@debian.org>
viewmol (2.4.1-18) unstable; urgency=low
* Build-depends: libpng-dev not libpng12-dev.  Closes: #662535.
* Update Build-depends: libtiff5-dev not libtiff4-dev
* Standards-version: 3.9.3
* In debian/rules:
- dh_pysupport is deprecated, use dh_python2 instead
- dh_clean -k is deprecated; use dh_prep instead
2010-09-26 - Drew Parsons <dparsons@debian.org>
viewmol (2.4.1-17) unstable; urgency=low
* Pre-apply the HURD patch 011_getmachine_HURD.diff from bug#534330
in order to allow the HURD to be recognised during debian/rules
clean. This rule is run before patch by dpkg-buildpackage.
(Probably not safe to set the dependency clean: patch).
2010-08-29 - Drew Parsons <dparsons@debian.org>
viewmol (2.4.1-16) unstable; urgency=low
* Patch 011_getmachine_HURD.diff lets the getmachine build script
recognise the Hurd.  Thanks Barry deFreese. Closes: #534330.
* Add debian/README.source to declare use of quilt patches via xsfbs.
* Remove dh_desktop from debian/rules (deprecated now).
* Standards-Version: 3.9.1
2009-03-27 - Drew Parsons <dparsons@debian.org>
viewmol (2.4.1-15) unstable; urgency=low
* Transfer to group maintainership with Debian Science.
* Standards version: 3.8.1.
* Build-Depends: quilt. debian/xsfbs borrowed from XSF (Xorg
packaging) to handle quilt patches. Source patches from previous
debian diff split into separate diffs in debian/patches:
010_build_scripts.diff
100_locale_exception.diff
110_desktop_app.diff
120_PyObject.diff
130_DEFAULTPATH.diff
140_bin_awk.diff
2009-02-23 - Drew Parsons <dparsons@debian.org>
viewmol (2.4.1-14) unstable; urgency=low
* Add symlink from main dir /usr/lib/viewmol to docs. Closes: #478551.
* Standards-Version: 3.8.0.
* Specify that copyright is GPL v2.
* Add dh_desktop to debian/rules to register mimetypes in desktop file.
2008-03-18 - Drew Parsons <dparsons@debian.org>
viewmol (2.4.1-13) unstable; urgency=low
* Use PyObject_Del to deallocate PyObjects instead of PyMem_DEL.
Thanks Barry deFreese for the patch.  Closes: #469008.
* Don't create separate links for KDE support files in /usr/share/applnk
anymore. These are handled generically (for all compliant Desktop
environments including Gnome) via
/usr/share/applications/viewmol.desktop.  Closes: #466998.
* Update debian/viewmol.sgml and doc-base to encode Jörg-Rüdiger's
name in UTF-8. Regenerate viewmol.1 using docbook2man.
* Where pythonlib is defined in source/getmachine, add 
| xargs echo | awk '{print $1}'
to ensure only one path is passed to dirname.
2008-01-14 - Drew Parsons <dparsons@debian.org>
viewmol (2.4.1-12) unstable; urgency=low
* What's so special about American English?  Change en_US locale to
just en in /usr/lib/viewmol/locale (and /usr/share/viewmol/locale)
and use it as a fallback in setAtomColors.py. Move existing
/etc/viewmol/locale/en_US to .../en in preinst. Closes: #446755.
* Disable kde/install's copying of "uninstall" in /usr/local.
* Link 32x32/apps/viewmol.png into /usr/share/pixmaps so Gnome can
get the menu icon too.
* Standards-Version: 3.7.3.
* Updated menu section to "Applications/Science/Chemistry".
Use /usr/share/pixmaps/viewmol.png as icon.
* Delete libraries from LIBS in source/getmachine flagged by
dpkg-shlibdeps as not actually used by viewmol (-lz -lXp -lXext
-lpthread -lutil -ldl).  Likewise remove -lm in source/Makefile
for tm and readgamess.
* source/getmachine: use -march instead of -mcpu for i386.
2007-06-28 - Drew Parsons <dparsons@debian.org>
viewmol (2.4.1-11) unstable; urgency=low
* Add build support for GNU/kFreeBSD (and probably Hurd too).
Closes: #415591.

See Also

Package Description
viewpdf.app_0.2dfsg1-4_i386.deb Portable Document Format (PDF) viewer for GNUstep
viewvc-query_1.1.5-1.4_all.deb utility to query CVS and Subversion commit database
viewvc_1.1.5-1.4_all.deb web interface for CVS and/or Subversion repositories
vifm_0.4-1_i386.deb a ncurses based file manager with vi like keybindings
vigor_0.016-19+deb7u1_i386.deb nvi with the evil paperclip
viking_1.3-1_i386.deb GPS data editor, analyzer and viewer
vile-common_9.8g-2_all.deb VI Like Emacs - support files for vile/xvile
vile-filters_9.8g-2_i386.deb VI Like Emacs - highlighting filters for vile/xvile
vile_9.8g-2_i386.deb VI Like Emacs - vi work-alike
vilistextum_2.6.9-1.1_i386.deb a HTML to text converter
vim-addon-manager_0.5.2_all.deb manager of addons for the Vim editor
vim-athena_7.3.547-7_i386.deb Vi IMproved - enhanced vi editor - with Athena GUI
vim-common_7.3.547-7_i386.deb Vi IMproved - Common files
vim-conque_2.3-1_all.deb plugin for running interactive commands in a Vim buffer
vim-doc_7.3.547-7_all.deb Vi IMproved - HTML documentation
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