vcftools_0.1.9-1_i386.deb


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Description

vcftools - designed for working with VCF files

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Main i386
Package name vcftools
Package version 0.1.9
Package release 1
Package architecture i386
Package type deb
Installed size 995 B
Download size 351.81 KB
Official Mirror ftp.br.debian.org
VCFtools is a program package designed for working with VCF files, such as
those generated by the 1000 Genomes Project. The aim of VCFtools is to
provide methods for working with VCF files: validating, merging, comparing
and calculate some basic population genetic statistics.

Alternatives

Package Version Architecture Repository
vcftools_0.1.9-1_amd64.deb 0.1.9 amd64 Debian Main
vcftools - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.4.0
perl -
zlib1g >= 1:1.2.6

Download

Type URL
Binary Package vcftools_0.1.9-1_i386.deb
Source Package vcftools

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install vcftools deb package:
    # sudo apt-get install vcftools

Files

Path
/usr/bin/fill-aa
/usr/bin/fill-an-ac
/usr/bin/vcf-annotate
/usr/bin/vcf-compare
/usr/bin/vcf-concat
/usr/bin/vcf-convert
/usr/bin/vcf-isec
/usr/bin/vcf-merge
/usr/bin/vcf-query
/usr/bin/vcf-sort
/usr/bin/vcf-stats
/usr/bin/vcf-subset
/usr/bin/vcf-to-tab
/usr/bin/vcf-validator
/usr/bin/vcftools
/usr/share/doc/vcftools/changelog.Debian.gz
/usr/share/doc/vcftools/changelog.gz
/usr/share/doc/vcftools/copyright
/usr/share/doc/vcftools/examples/annotate-test.vcf
/usr/share/doc/vcftools/examples/annotate.out
/usr/share/doc/vcftools/examples/annotate.txt
/usr/share/doc/vcftools/examples/annotate2.out
/usr/share/doc/vcftools/examples/annotate3.out
/usr/share/doc/vcftools/examples/cmp-test-a-3.3.vcf
/usr/share/doc/vcftools/examples/cmp-test-a.vcf
/usr/share/doc/vcftools/examples/cmp-test-b-3.3.vcf
/usr/share/doc/vcftools/examples/cmp-test-b.vcf
/usr/share/doc/vcftools/examples/cmp-test.out
/usr/share/doc/vcftools/examples/concat-a.vcf
/usr/share/doc/vcftools/examples/concat-b.vcf
/usr/share/doc/vcftools/examples/concat-c.vcf
/usr/share/doc/vcftools/examples/concat.out
/usr/share/doc/vcftools/examples/consensus.fa
/usr/share/doc/vcftools/examples/consensus.out
/usr/share/doc/vcftools/examples/consensus.out2
/usr/share/doc/vcftools/examples/consensus.vcf
/usr/share/doc/vcftools/examples/fill-an-ac.out
/usr/share/doc/vcftools/examples/filters.txt
/usr/share/doc/vcftools/examples/floats.vcf
/usr/share/doc/vcftools/examples/indel-stats.out
/usr/share/doc/vcftools/examples/indel-stats.tab
/usr/share/doc/vcftools/examples/indel-stats.vcf
/usr/share/doc/vcftools/examples/invalid-4.0.vcf
/usr/share/doc/vcftools/examples/isec-n2-test.vcf.out
/usr/share/doc/vcftools/examples/merge-test-a.vcf
/usr/share/doc/vcftools/examples/merge-test-b.vcf
/usr/share/doc/vcftools/examples/merge-test-c.vcf
/usr/share/doc/vcftools/examples/merge-test.vcf.out
/usr/share/doc/vcftools/examples/parse-test.vcf
/usr/share/doc/vcftools/examples/perl-api-1.pl
/usr/share/doc/vcftools/examples/query-test.out
/usr/share/doc/vcftools/examples/shuffle-test.vcf
/usr/share/doc/vcftools/examples/subset.SNPs.out
/usr/share/doc/vcftools/examples/subset.indels.out
/usr/share/doc/vcftools/examples/subset.vcf
/usr/share/doc/vcftools/examples/valid-3.3.vcf
/usr/share/doc/vcftools/examples/valid-4.0.vcf
/usr/share/doc/vcftools/examples/valid-4.0.vcf.stats.gz
/usr/share/doc/vcftools/examples/valid-4.1.vcf
/usr/share/man/man1/fill-aa.1.gz
/usr/share/man/man1/fill-an-ac.1.gz
/usr/share/man/man1/fill-rsIDs.1.gz
/usr/share/man/man1/vcf-annotate.1.gz
/usr/share/man/man1/vcf-compare.1.gz
/usr/share/man/man1/vcf-concat.1.gz
/usr/share/man/man1/vcf-convert.1.gz
/usr/share/man/man1/vcf-isec.1.gz
/usr/share/man/man1/vcf-merge.1.gz
/usr/share/man/man1/vcf-query.1.gz
/usr/share/man/man1/vcf-sort.1.gz
/usr/share/man/man1/vcf-stats.1.gz
/usr/share/man/man1/vcf-subset.1.gz
/usr/share/man/man1/vcf-to-tab.1.gz
/usr/share/man/man1/vcf-validator.1.gz
/usr/share/man/man1/vcftools.1.gz
/usr/share/perl5/FaSlice.pm
/usr/share/perl5/Vcf.pm
/usr/share/perl5/VcfStats.pm

Changelog

2012-05-12 - Andreas Tille <tille@debian.org>
vcftools (0.1.9-1) unstable; urgency=low
* New upstream version
* debian/upstream: Added citations
* debian/control:Standards-Version: 3.9.3 (no changes needed)
* debian/{get-orig-source,rules,watch}: Make sure we always get the
latest version
* debhelper 9 (control+compat)
* debian/{rules,install,examples}: use debhelper files to install
files (upstream changed some targets so the old copying mechanism
did not worked any more)
* debian/patches/use-dpkg-buildflags.patch: Enable propagation of
hardening flags
2011-10-19 - Thorsten Alteholz <debian@alteholz.de>
vcftools (0.1.7-1) unstable; urgency=low
* new upstream version
* rearrange debian/copyright to calm lintian
2011-07-10 - Thorsten Alteholz <debian@alteholz.de>
vcftools (0.1.6-1) unstable; urgency=low
[ Thorsten ]
* Initial release (Closes: #633142).
[ Steffen as the package's sponsor ]
* Added README.source
* Removed Andreas and myself from uploaders
* Followed FTPmaster's advice to remove the source-less .pdf from source tree

See Also

Package Description
vcheck_1.2.1-7_all.deb Utility to check and download the most recent program version
vclt-tools_0.1.2-3_all.deb Collection of tools to create and manipulate VCLT playlists
vco-plugins_0.3.0-2_i386.deb LADSPA plugin sporting anti-aliased oscillators
vcsh_1.0-1_all.deb manage config files in $HOME via fake bare git repositories
vde2-cryptcab_2.3.2-4_i386.deb Virtual Distributed Ethernet - CryptCab
vde2_2.3.2-4_i386.deb Virtual Distributed Ethernet
vdesk_1.2-3.1_i386.deb manages virtual desktops for minimal window managers
vdetelweb_1.2.1-1_i386.deb Telnet and Web interface for VDE 2.x
vdk-doc_1.2.4-4_all.deb The Visual Development Kit C++ library
vdk2-tutorial_1.1-3_all.deb Tutorial for the Visual Development Kit C++ library 2
vdkbuilder2_2.4.0-4.3_i386.deb RAD for VDK
vdmfec_1.0-2_i386.deb recover lost blocks using Forward Error Correction
vdpau-va-driver_0.7.3-2_i386.deb VDPAU-based backend for VA API
vdpauinfo_0.0.6-1_i386.deb Video Decode and Presentation API for Unix (vdpauinfo utility)
vdr-dev_1.7.28-1_all.deb Video Disk Recorder for DVB cards
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