tree-ppuzzle_5.2-7_i386.deb


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Description

tree-ppuzzle - Parallelized reconstruction of phylogenetic trees by maximum likelihood

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Main i386
Package name tree-ppuzzle
Package version 5.2
Package release 7
Package architecture i386
Package type deb
Installed size 376 B
Download size 163.66 KB
Official Mirror ftp.br.debian.org
TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that
implements a fast tree search algorithm, quartet puzzling, that allows
analysis of large data sets and automatically assigns estimations of support
to each internal branch. TREE-PUZZLE also computes pairwise maximum
likelihood distances as well as branch lengths for user specified trees.
Branch lengths can also be calculated under the clock-assumption. In
addition, TREE-PUZZLE offers a novel method, likelihood mapping, to
investigate the support of a hypothesized internal branch without
computing an overall tree and to visualize the phylogenetic content of
a sequence alignment.
This is the parallelized version of tree-puzzle.

Alternatives

Package Version Architecture Repository
tree-ppuzzle_5.2-7_amd64.deb 5.2 amd64 Debian Main
tree-ppuzzle - - -

Requires

Name Value
libc6 >= 2.7
libopenmpi1.3 -
libsprng2 -
openmpi-bin -

Download

Type URL
Binary Package tree-ppuzzle_5.2-7_i386.deb
Source Package tree-puzzle

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install tree-ppuzzle deb package:
    # sudo apt-get install tree-ppuzzle

Files

Path
/usr/bin/tree-ppuzzle
/usr/share/doc/tree-ppuzzle/AUTHORS
/usr/share/doc/tree-ppuzzle/README
/usr/share/doc/tree-ppuzzle/README.Debian
/usr/share/doc/tree-ppuzzle/changelog.Debian.gz
/usr/share/doc/tree-ppuzzle/changelog.gz
/usr/share/doc/tree-ppuzzle/copyright
/usr/share/man/man1/tree-ppuzzle.1.gz
/usr/share/menu/tree-ppuzzle
/usr/share/pixmaps/tree-ppuzzle.xpm

See Also

Package Description
tree-puzzle-doc_5.2-7_all.deb Reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle_5.2-7_i386.deb Reconstruction of phylogenetic trees by maximum likelihood
tree_1.6.0-1_i386.deb displays directory tree, in color
treeline_1.4.1-1_all.deb versatile tree-like structured custom data manager
treetop_1.4.10-5_all.deb Ruby-based text parsing and interpretation (command-line utility)
treeviewx_0.5.1+20100823-1_i386.deb Displays and prints phylogenetic trees
treil_1.8-1.1_i386.deb tree structure into tiles
trend_1.2-1_i386.deb a general-purpose, efficient trend graph
trickle_1.07-9+b1_i386.deb user-space bandwidth shaper
trigger-rally-data_0.6.0-1_all.deb free 3D rally racing car game - data files
trigger-rally_0.6.0-1+b2_i386.deb free 3D rally racing car game
triggerhappy_0.3.4-2_i386.deb global hotkey daemon for Linux
trimage_1.0.5-1_all.deb GUI and command-line interface to optimize image files
triplane_1.0.7-1_i386.deb side-scrolling dogfighting game
triplea_1.5.2.1-1_all.deb Turn based strategy game
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