tabix_0.2.6-1_i386.deb


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Description

tabix - generic indexer for TAB-delimited genome position files

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Main i386
Package name tabix
Package version 0.2.6
Package release 1
Package architecture i386
Package type deb
Installed size 159 B
Download size 62.33 KB
Official Mirror ftp.br.debian.org
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosme), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.

Alternatives

Package Version Architecture Repository
tabix_0.2.6-1_amd64.deb 0.2.6 amd64 Debian Main
tabix - - -

Requires

Name Value
libc6 >= 2.7
zlib1g >= 1:1.2.3.3

Download

Type URL
Binary Package tabix_0.2.6-1_i386.deb
Source Package tabix

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install tabix deb package:
    # sudo apt-get install tabix

Files

Path
/usr/bin/bgzip
/usr/bin/tabix
/usr/share/doc/tabix/NEWS.gz
/usr/share/doc/tabix/README.test
/usr/share/doc/tabix/changelog.Debian.gz
/usr/share/doc/tabix/changelog.gz
/usr/share/doc/tabix/copyright
/usr/share/doc/tabix/examples/example.gtf.gz
/usr/share/doc/tabix/examples/example.gtf.gz.tbi
/usr/share/man/man1/bgzip.1.gz
/usr/share/man/man1/tabix.1.gz

Changelog

2012-06-22 - Charles Plessy <plessy@debian.org>
tabix (0.2.6-1) unstable; urgency=low
60eb374 Imported Upstream version 0.2.6
9de2ad5 Removed patches applied or obsoleted upstream.
2836b51 Refreshed hardening patch.
7677e45 Regression tests for autopkgtest.
2012-05-11 - Andreas Tille <tille@debian.org>
tabix (0.2.5-3) unstable; urgency=low
* debian/patches/use-dpkg-buildflags.patch: Really enable hardening
build flags (Thanks for the patch to Simon Ruderich <simon@ruderich.org>)
Closes: #670759
* debian/patches/ld-as-needed.patch:  Enable building with --as-needed
(Thanks to David Shorten <dpshorten@gmail.com> for the patch)
Closes: #632150
2012-04-25 - Andreas Tille <tille@debian.org>
tabix (0.2.5-2) unstable; urgency=low
[ Charles Plessy ]
7a09003 Added metadata about Upstream in debian/upstream.
1a85d96 Refreshed Debian copyright file
9c70833 Include 7 digits of the commit ID in the changelog entry.
[ Andreas Tille ]
* debian/patches/count-set-but-not-used.patch: uncomment unused
variable
Closes: #626267
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- removed cdbs from Build-Depends
* debian/rules: Switched to dh to easily enable hardening flags
* debhelper 9 (control+compat) to enable building with hardening
flags
* debian/patches/use-dpkg-buildflags.patch: Regard hardening flags
* debian/watch: Use sf.net redirector
2011-05-10 - Charles Plessy <plessy@debian.org>
tabix (0.2.5-1) unstable; urgency=low
* New upstream release.
* Added debian/README.test to explain how to test tabix and bgzip.
2011-04-12 - Charles Plessy <plessy@debian.org>
tabix (0.2.4-1) unstable; urgency=low
* New upstream release.
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control).
2011-01-19 - Charles Plessy <plessy@debian.org>
tabix (0.2.3-1) unstable; urgency=low
* Initial release (Closes: #606446)

See Also

Package Description
tableau-parm_0.2.0-1_i386.deb tableau write-blocking bridge query/command utility
tablix2_0.3.5-2_i386.deb Kernel for solving general timetabling problems
tacacs+_4.0.4.19-11_i386.deb TACACS+ authentication daemon
tachyon-doc_0.99~b2+dfsg-0.4_all.deb documentation for Tachyon ray tracer
tachyon_0.99~b2+dfsg-0.4_i386.deb Parallel/Multiprocessor Ray Tracing Software
tack_1.07-1_i386.deb terminfo action checker
tads2-mode_1.2-2_all.deb Emacs mode for editing TADS code
tagainijisho-common_0.9.4-1_all.deb Common files for Tagaini Jisho
tagainijisho-dic-de_0.9.4-1_all.deb German dictionary files for Tagaini Jisho
tagainijisho-dic-en_0.9.4-1_all.deb English dictionary files for Tagaini Jisho
tagainijisho-dic-es_0.9.4-1_all.deb Spanish dictionary files for Tagaini Jisho
tagainijisho-dic-fr_0.9.4-1_all.deb French dictionary files for Tagaini Jisho
tagainijisho-dic-it_0.9.4-1_all.deb Italian dictionary files for Tagaini Jisho
tagainijisho-dic-pt_0.9.4-1_all.deb Portuguese dictionary files for Tagaini Jisho
tagainijisho-dic-ru_0.9.4-1_all.deb Russian dictionary files for Tagaini Jisho
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