t-coffee - Multiple Sequence Alignment

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Main i386
Package name t-coffee
Package version 9.02.r1228
Package release 2
Package architecture i386
Package type deb
Installed size 1.92 KB
Download size 789.48 KB
Official Mirror ftp.br.debian.org
T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence
alignment. Version 2.00 and higher can mix sequences and structures.
T-Coffee allows the combination of a collection of multiple/pairwise,
global or local alignments into a single model. It also allows to
estimate the level of consistency of each position within the new
alignment with the rest of the alignments. See the pre-print for more
T-Coffee has a special called M-Coffee that makes it possible to combine the
output of many multiple sequence alignment packages. In its published version,
it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
T-Coffee.  A special version has been made for Debian, DM-Coffee, that uses
only free software by replacing Clustal W by Kalign. Using the 8 Methods of
M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
methods if you prefer.


Package Version Architecture Repository
t-coffee_9.02.r1228-2_amd64.deb 9.02.r1228 amd64 Debian Main
t-coffee - - -


Name Value
libc6 >= 2.7


Type URL
Binary Package t-coffee_9.02.r1228-2_i386.deb
Source Package t-coffee

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install t-coffee deb package:
    # sudo apt-get install t-coffee




2012-03-02 - Charles Plessy <plessy@debian.org>
t-coffee (9.02.r1228-2) unstable; urgency=low
* Recommend tm-align instead of distributing local copy
(debian/control, debian/t-coffee.install, Closes: #661516).
2012-02-27 - Charles Plessy <plessy@debian.org>
t-coffee (9.02.r1228-1) unstable; urgency=low
* New upstream release (Closes: #649263).
* Build new Fortran tool (debian/rules debian/contol debian/t-coffee.install)
* Corrected debian/rules as upstream test suite was removed.
* Complies with Policy 3.9.3 (debian/control, no other changes needed).
* Removed doc-base registrations debian/t-coffee-doc.doc-base.technical and
debian/t-coffee-doc.doc-base.tutorial, as the files disappeared upstream.
2011-06-21 - Charles Plessy <plessy@debian.org>
t-coffee (8.99-1) unstable; urgency=low
* New upstream release in Debian.
* Converted and validated debian/copyright to DEP 5 machine-readable format.
* Using debhelper 8 (debian/control, debian/compat).
* Incremented Standards-Version to reflect conformance with Policy 3.9.2.
(debian/control, no change needed).
* Corrected VCS URLs in debian/control.
* Run upstream tests at build time (debian/rules, debian/README.test).
2011-01-29 - Tim Booth <tbooth@ceh.ac.uk>
t-coffee (8.99-0ubuntu1) lucid; urgency=low
* Rebuild for new upstream release.
* There is no changelog from upstream to read.
2010-11-23 - Tim Booth <tbooth@ceh.ac.uk>
t-coffee (8.97-0ubuntu2) lucid; urgency=low
* New upstream release, changed watch file and auto rebuild using uupdate
* Cleared out old patch - apparently unneeded or else needs total re-write
2010-11-01 - Tim Booth <tbooth@ceh.ac.uk>
t-coffee (8.95-1) lucid; urgency=low
* New upstream version, rebuild by Tim for Bio-Linux/Lucid
2010-06-24 - Andreas Tille <tille@debian.org>
t-coffee (8.84-1) unstable; urgency=low
* New upstream version
2010-04-09 - Andreas Tille <tille@debian.org>
t-coffee (8.47-1) unstable; urgency=low
[ Charles Plessy ]
* Collected Upstream information in debian/upstream-metadata.yaml.
[ Andreas Tille ]
* New upstream version
* Source format 3.0 (quilt)
* Standards-Version: 3.8.4 (no changes needed)
2009-11-03 - Andreas Tille <tille@debian.org>
t-coffee (8.14-1) unstable; urgency=low
* New upstream version
2009-10-01 - Andreas Tille <tille@debian.org>
t-coffee (8.13-1) unstable; urgency=low
* New upstream version

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