t-coffee_9.02.r1228-2_i386.deb


Advertisement

Description

t-coffee - Multiple Sequence Alignment

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Main i386
Package name t-coffee
Package version 9.02.r1228
Package release 2
Package architecture i386
Package type deb
Installed size 1.92 KB
Download size 789.48 KB
Official Mirror ftp.br.debian.org
T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence
alignment. Version 2.00 and higher can mix sequences and structures.
T-Coffee allows the combination of a collection of multiple/pairwise,
global or local alignments into a single model. It also allows to
estimate the level of consistency of each position within the new
alignment with the rest of the alignments. See the pre-print for more
information
T-Coffee has a special called M-Coffee that makes it possible to combine the
output of many multiple sequence alignment packages. In its published version,
it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
T-Coffee.  A special version has been made for Debian, DM-Coffee, that uses
only free software by replacing Clustal W by Kalign. Using the 8 Methods of
M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
methods if you prefer.

Alternatives

Package Version Architecture Repository
t-coffee_9.02.r1228-2_amd64.deb 9.02.r1228 amd64 Debian Main
t-coffee - - -

Requires

Name Value
libc6 >= 2.7

Download

Type URL
Binary Package t-coffee_9.02.r1228-2_i386.deb
Source Package t-coffee

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install t-coffee deb package:
    # sudo apt-get install t-coffee

Files

Path
/usr/bin/t_coffee
/usr/share/doc/t-coffee/README.Debian
/usr/share/doc/t-coffee/changelog.Debian.gz
/usr/share/doc/t-coffee/copyright
/usr/share/man/man1/t_coffee.1.gz

Changelog

2012-03-02 - Charles Plessy <plessy@debian.org>
t-coffee (9.02.r1228-2) unstable; urgency=low
* Recommend tm-align instead of distributing local copy
(debian/control, debian/t-coffee.install, Closes: #661516).
2012-02-27 - Charles Plessy <plessy@debian.org>
t-coffee (9.02.r1228-1) unstable; urgency=low
* New upstream release (Closes: #649263).
* Build new Fortran tool (debian/rules debian/contol debian/t-coffee.install)
* Corrected debian/rules as upstream test suite was removed.
* Complies with Policy 3.9.3 (debian/control, no other changes needed).
* Removed doc-base registrations debian/t-coffee-doc.doc-base.technical and
debian/t-coffee-doc.doc-base.tutorial, as the files disappeared upstream.
2011-06-21 - Charles Plessy <plessy@debian.org>
t-coffee (8.99-1) unstable; urgency=low
* New upstream release in Debian.
* Converted and validated debian/copyright to DEP 5 machine-readable format.
* Using debhelper 8 (debian/control, debian/compat).
* Incremented Standards-Version to reflect conformance with Policy 3.9.2.
(debian/control, no change needed).
* Corrected VCS URLs in debian/control.
* Run upstream tests at build time (debian/rules, debian/README.test).
2011-01-29 - Tim Booth <tbooth@ceh.ac.uk>
t-coffee (8.99-0ubuntu1) lucid; urgency=low
* Rebuild for new upstream release.
* There is no changelog from upstream to read.
2010-11-23 - Tim Booth <tbooth@ceh.ac.uk>
t-coffee (8.97-0ubuntu2) lucid; urgency=low
* New upstream release, changed watch file and auto rebuild using uupdate
* Cleared out old patch - apparently unneeded or else needs total re-write
2010-11-01 - Tim Booth <tbooth@ceh.ac.uk>
t-coffee (8.95-1) lucid; urgency=low
* New upstream version, rebuild by Tim for Bio-Linux/Lucid
2010-06-24 - Andreas Tille <tille@debian.org>
t-coffee (8.84-1) unstable; urgency=low
* New upstream version
2010-04-09 - Andreas Tille <tille@debian.org>
t-coffee (8.47-1) unstable; urgency=low
[ Charles Plessy ]
* Collected Upstream information in debian/upstream-metadata.yaml.
[ Andreas Tille ]
* New upstream version
* Source format 3.0 (quilt)
* Standards-Version: 3.8.4 (no changes needed)
2009-11-03 - Andreas Tille <tille@debian.org>
t-coffee (8.14-1) unstable; urgency=low
* New upstream version
2009-10-01 - Andreas Tille <tille@debian.org>
t-coffee (8.13-1) unstable; urgency=low
* New upstream version

See Also

Package Description
t-prot_2.101-2_all.deb display filter for RFC822 messages
t1-cyrillic_4.16_all.deb A basic set of free PostScript fonts
t1-oldslavic_4.16_all.deb OldSlavic -- a Cyrillic Type1 font with medieval design
t1-teams_4.16_all.deb Teams -- a PostScript font covering ASCII and basic Cyrillic
t1lib-bin_5.1.2-3.6_i386.deb Type 1 font rasterizer library - user binaries
t1utils_1.37-1_i386.deb Collection of simple Type 1 font manipulation programs
t2html_2010.0302+gitbec03e2-2_all.deb text to HTML converter implemented in Perl
t38modem_2.0.0-3_i386.deb T.38 Fax over IP pseudo modem
tabble_0.43-1_i386.deb program launcher with tabs for X
tabix_0.2.6-1_i386.deb generic indexer for TAB-delimited genome position files
tableau-parm_0.2.0-1_i386.deb tableau write-blocking bridge query/command utility
tablix2_0.3.5-2_i386.deb Kernel for solving general timetabling problems
tacacs+_4.0.4.19-11_i386.deb TACACS+ authentication daemon
tachyon-doc_0.99~b2+dfsg-0.4_all.deb documentation for Tachyon ray tracer
tachyon_0.99~b2+dfsg-0.4_i386.deb Parallel/Multiprocessor Ray Tracing Software
Advertisement
Advertisement