staden-io-lib-utils_1.12.4-1_i386.deb


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Description

staden-io-lib-utils - programs for maniuplating DNA sequencing files

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Main i386
Package name staden-io-lib-utils
Package version 1.12.4
Package release 1
Package architecture i386
Package type deb
Installed size 428 B
Download size 162.79 KB
Official Mirror ftp.br.debian.org
The io_lib from the Staden package is a library of file reading and writing
code to provide a general purpose trace file (and Experiment File) reading
interface. It has been compiled and tested on a variety of unix systems,
MacOS X and MS Windows.
This package contains the programs that are distributed with the Staden io_lib
for manipulating and converting sequencing data files, and in particular files
to maniuplate short reads generated by second and third generation sequencers
and stored in SRF format.

Alternatives

Package Version Architecture Repository
staden-io-lib-utils_1.13.7-1~bpo70+1_i386.deb 1.13.7 i386 Debian Backports Main
staden-io-lib-utils_1.13.7-1~bpo70+1_amd64.deb 1.13.7 amd64 Debian Backports Main
staden-io-lib-utils_1.12.4-1_amd64.deb 1.12.4 amd64 Debian Main
staden-io-lib-utils - - -

Requires

Name Value
libc6 >= 2.7
libstaden-read1 >= 1.12.4

Download

Type URL
Binary Package staden-io-lib-utils_1.12.4-1_i386.deb
Source Package staden-io-lib

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install staden-io-lib-utils deb package:
    # sudo apt-get install staden-io-lib-utils

Files

Path
/usr/bin/append_sff
/usr/bin/convert_trace
/usr/bin/extract_fastq
/usr/bin/extract_qual
/usr/bin/extract_seq
/usr/bin/get_comment
/usr/bin/hash_extract
/usr/bin/hash_list
/usr/bin/hash_sff
/usr/bin/hash_tar
/usr/bin/index_tar
/usr/bin/makeSCF
/usr/bin/scf_dump
/usr/bin/scf_info
/usr/bin/scf_update
/usr/bin/srf2fasta
/usr/bin/srf2fastq
/usr/bin/srf_dump_all
/usr/bin/srf_extract_hash
/usr/bin/srf_extract_linear
/usr/bin/srf_filter
/usr/bin/srf_index_hash
/usr/bin/srf_info
/usr/bin/srf_list
/usr/bin/trace_dump
/usr/bin/ztr_dump
/usr/share/doc-base/staden-io-lib-hash-file-format
/usr/share/doc-base/staden-io-lib-ztr-format
/usr/share/doc/staden-io-lib-utils/CHANGES.gz
/usr/share/doc/staden-io-lib-utils/Hash_File_Format
/usr/share/doc/staden-io-lib-utils/README.gz
/usr/share/doc/staden-io-lib-utils/ZTR_format.gz
/usr/share/doc/staden-io-lib-utils/changelog.Debian.gz
/usr/share/doc/staden-io-lib-utils/changelog.gz
/usr/share/doc/staden-io-lib-utils/copyright
/usr/share/man/man1/srf2fasta.1.gz
/usr/share/man/man1/srf2fastq.1.gz
/usr/share/man/man1/srf_index_hash.1.gz
/usr/share/man/man1/srf_info.1.gz
/usr/share/man/man1/srf_list.1.gz

Changelog

2010-07-27 - Charles Plessy <plessy@debian.org>
staden-io-lib (1.12.4-1) unstable; urgency=low
* New upstream release, with changes on endianness detection
(closes: #579239).
* Build on all architectures, (debian/control).
* Added library symbols file (debian/libstaden-read1.symbols).
* Incremented Standards-Version to reflect conformance with Policy 3.9.1
(debian/control, no changes needed).
* Moved io_lib-config from staden-io-lib-utils to libstaden-read-dev
(debian/rules, debian/control).
2010-05-22 - Charles Plessy <plessy@debian.org>
staden-io-lib (1.12.2-2) unstable; urgency=low
* Restrict staden-io-lib to i386 and amd64 platforms, which are the
only ones where it is known to work and be used (debian/control).
* Provide a patch for helping people interested in building this
package on other architectures (debian/endianness.patch).
* Incremented Standards-Version to reflect conformance with Policy 3.8.4
(debian/control, no changes needed).
2010-01-17 - Charles Plessy <plessy@debian.org>
staden-io-lib (1.12.2-1) unstable; urgency=low
* New upstream release: extra options in srf2fastq and API changes in
HashTable code.
* Removed the libtool ‘.la’ library (debian/staden-read-dev.install).
* Incremented Standards-Version to reflect conformance with Policy 3.8.3
(no changes needed).
2009-08-10 - Charles Plessy <plessy@debian.org>
staden-io-lib (1.12.1-1) unstable; urgency=low
* Initial release (Closes: #530753)

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