ssake - genomics application for assembling millions of very short DNA sequences

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Main i386
Package name ssake
Package version 3.8
Package release 2
Package architecture all
Package type deb
Installed size 157 B
Download size 43.01 KB
Official Mirror
The Short Sequence Assembly by K-mer search and 3′ read Extension
(SSAKE) is a genomics application for aggressively assembling
millions of short nucleotide sequences by progressively searching for
perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to
help leverage the information from short sequences reads by
stringently clustering them into contigs that can be used to
characterize novel sequencing targets.


Package Version Architecture Repository
ssake_3.8-2_all.deb 3.8 all Debian Main
ssake - - -


Name Value
libperl4-corelibs-perl -
perl << 5.12.3-7
perl -
python -


Type URL
Binary Package ssake_3.8-2_all.deb
Source Package ssake

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install ssake deb package:
    # sudo apt-get install ssake



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