ssake_3.8-2_all.deb


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Description

ssake - genomics application for assembling millions of very short DNA sequences

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Main i386
Package name ssake
Package version 3.8
Package release 2
Package architecture all
Package type deb
Installed size 157 B
Download size 43.01 KB
Official Mirror ftp.br.debian.org
The Short Sequence Assembly by K-mer search and 3′ read Extension
(SSAKE) is a genomics application for aggressively assembling
millions of short nucleotide sequences by progressively searching for
perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to
help leverage the information from short sequences reads by
stringently clustering them into contigs that can be used to
characterize novel sequencing targets.

Alternatives

Package Version Architecture Repository
ssake_3.8-2_all.deb 3.8 all Debian Main
ssake - - -

Requires

Name Value
libperl4-corelibs-perl -
perl -
perl << 5.12.3-7
python -

Download

Type URL
Binary Package ssake_3.8-2_all.deb
Source Package ssake

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install ssake deb package:
    # sudo apt-get install ssake

Files

Path
/usr/bin/ssake
/usr/bin/tqs
/usr/share/doc/ssake/README.Debian
/usr/share/doc/ssake/SSAKE.readme.gz
/usr/share/doc/ssake/TQS.readme
/usr/share/doc/ssake/changelog.Debian.gz
/usr/share/doc/ssake/copyright
/usr/share/man/man1/ssake.1.gz
/usr/share/man/man1/tqs.1.gz
/usr/share/ssake/makeFastaFileFromScaffolds.pl
/usr/share/ssake/makePairedOutput.pl
/usr/share/ssake/makePairedOutput2EQUALfiles.pl
/usr/share/ssake/makePairedOutput2UNEQUALfiles.pl
/usr/share/ssake/nLength.pl

See Also

Package Description
ssed_3.62-7_i386.deb The super sed stream editor
ssft_0.9.13_all.deb Shell Scripts Frontend Tool
ssh-askpass-fullscreen_0.3-3.1_i386.deb Under Gnome2, asks user for a passphrase for ssh-add
ssh-askpass-gnome_6.0p1-4+deb7u4_i386.deb interactive X program to prompt users for a passphrase for ssh-add
ssh-askpass_1.2.4.1-9_i386.deb under X, asks user for a passphrase for ssh-add
ssh-contact-client_0.7-1_i386.deb establish SSH connections to your IM contacts using Telepathy (client)
ssh-contact-service_0.7-1_i386.deb establish SSH connections to your IM contacts using Telepathy (server)
ssh-contact_0.7-1_all.deb establish SSH connections to your IM contacts using Telepathy (metapackage)
ssh-krb5_6.0p1-4+deb7u4_all.deb secure shell client and server (transitional package)
ssh_6.0p1-4+deb7u4_all.deb secure shell client and server (metapackage)
sshfp_1.2.2-4_all.deb DNS SSHFP records generator
sshfs_2.4-1_i386.deb filesystem client based on SSH File Transfer Protocol
sshguard_1.5-5_i386.deb Protects from brute force attacks against ssh
sshmenu_3.18-2_all.deb Menu for quick connections to your remote hosts
sshpass_1.05-1_i386.deb Non-interactive ssh password authentication
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