phyml_20110919-1_amd64.deb


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Description

phyml - Phylogenetic estimation using Maximum Likelihood

Property Value
Distribution Debian 7 (Wheezy)
Repository Debian Main amd64
Package name phyml
Package version 20110919
Package release 1
Package architecture amd64
Package type deb
Installed size 1.91 KB
Download size 1.02 MB
Official Mirror ftp.br.debian.org
PhyML is a software that estimates maximum likelihood phylogenies from
alignments of nucleotide or amino acid sequences. It provides a wide
range of options that were designed to facilitate standard phylogenetic
analyses. The main strengths of PhyML lies in the large number of
substitution models coupled to various options to search the space of
phylogenetic tree topologies, going from very fast and efficient methods
to slower but generally more accurate approaches. It also implements
two methods to evaluate branch supports in a sound statistical framework
(the non-parametric bootstrap and the approximate likelihood ratio test).
PhyML was designed to process moderate to large data sets. In theory,
alignments with up to 4,000 sequences 2,000,000 character-long can
be analyzed. In  practice however, the amount of memory required to process
a data set is proportional of the product of the number of sequences by their
length. Hence, a large number of sequences can only be processed provided
that they are short. Also, PhyML can handle long sequences provided that
they are not numerous. With most standard personal computers, the “comfort
zone” for PhyML generally lies around 3 to 500 sequences less than 2,000
character long.
This pakcage also includes PhyTime.

Alternatives

Package Version Architecture Repository
phyml_20110919-1_i386.deb 20110919 i386 Debian Main
phyml - - -

Requires

Name Value
libc6 >= 2.7

Download

Type URL
Binary Package phyml_20110919-1_amd64.deb
Source Package phyml

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install phyml deb package:
    # sudo apt-get install phyml

Files

Path
/usr/bin/phyml
/usr/bin/phytime
/usr/share/doc-base/phyml
/usr/share/doc/phyml/changelog.Debian.gz
/usr/share/doc/phyml/changelog.gz
/usr/share/doc/phyml/copyright
/usr/share/doc/phyml/phyml_manual.pdf
/usr/share/man/man1/phyml.1.gz

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