fsl-core_5.0.8-6_all.deb


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Description

fsl-core - metapackage for the latest version of FSL

Property Value
Distribution Debian 10 (Buster)
Repository Debian Nonfree amd64
Package filename fsl-core_5.0.8-6_all.deb
Package name fsl-core
Package version 5.0.8
Package release 6
Package architecture all
Package type deb
Category non-free/science
Homepage http://www.fmrib.ox.ac.uk/fsl/
License -
Maintainer NeuroDebian Team <team@neuro.debian.net>
Download size 20.70 KB
Installed size 43.00 KB
FSL is a comprehensive library of image analysis and statistical tools
for fMRI, MRI and DTI brain imaging data. The suite consists of various
command line tools, as well as simple GUIs for its core analysis pipelines.
Among others, FSL offers implementations of standard GLM analysis,
white matter tractography, tissue segmentation, affine and non-linear
co-registration, and independent component analysis.
Some FSL components require additional data packages (fsl-atlases,
fsl-first-data, fsl-possum-data) that are currently available from the
NeuroDebian repository only. For more information on how to obtain these
data packages visit http://neuro.debian.net.
Users aiming to perform a complete FSL installation (including
all data components) are advised to install the 'fsl-complete'
package from NeuroDebian.

Alternatives

Package Version Architecture Repository
fsl-core_5.0.9-5~nd100+1_all.deb 5.0.9 all NeuroDebian Nonfree
fsl-core_5.0.9-5~nd100+1_all.deb 5.0.9 all NeuroDebian Nonfree
fsl-core_5.0.8-6_all.deb 5.0.8 all Debian Nonfree
fsl-core - - -

Requires

Name Value
fsl-5.0-core -

Replaces

Name Value
fsl << 5.0.3

Download

Type URL
Mirror ftp.br.debian.org
Binary Package fsl-core_5.0.8-6_all.deb
Source Package fsl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install fsl-core deb package:
    # sudo apt-get install fsl-core

Files

Path
/etc/fsl/fsl.sh
/usr/share/doc/fsl-core/NEWS.Debian.gz
/usr/share/doc/fsl-core/changelog.Debian.gz
/usr/share/doc/fsl-core/copyright
/usr/share/man/man1/fsl.1.gz

Changelog

2019-01-15 - Andreas Tille <tille@debian.org>
fsl (5.0.8-6) unstable; urgency=medium
* Team upload.
[ Yaroslav Halchenko ]
* Add 'file' to Depends of fsl-5.0-core. Required by fslFixText utility
* debian/fsl.sh - place FSL's bin path first (not the last) within adjusted
$PATH (Closes: #804881)
* debian/patches/up_in_compar to fix FTBFS of melodic on 17.04
Closes: #837361
[ Michael Hanke ]
* Move 'fslview' from a dependency into suggests. It can no longer be
built in Debian unstable.
Closes: #864178
[ Andreas Tille ]
* Replace watch line pointing to alioth which does not exist any more
by fake watch file
* debhelper 9
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.3.0
* Fix call of overloaded 'round(float)' is ambiguous
* Silence lintian about false positive spelling
* fsl-5.0-core Depends: sensible-utils
* Drop Encoding key from desktop file
* Drop Debian menu file (since there is a desktop file)
* hardening=+all
2015-08-21 - Michael Hanke <mih@debian.org>
fsl (5.0.8-5) unstable; urgency=medium
* Disable unecessary unportable debugging code that breaks on kfreebsd.
2015-08-17 - Michael Hanke <mih@debian.org>
fsl (5.0.8-4) unstable; urgency=medium
* Remove versioned dependencies on transitional packages libgd2-(no)xpm-dev
in favor of a dependency on libgd-dev (Closes: #792291). Thanks to
Mattia Rizzolo for the report.
* Add patch to force FSL to use its own modified version of the BWidget
TCL package. This prevents incompatibility issues if a system-wide
BWidget installation is found (Closes: #792758). The "fix" forces a
version requirement on BWidget 1.8 (matches embedded version,
Debian has 1.9.x as of now). This is not ideal, but a minimally intrusive
change that achieves the desired behavior. Thanks to Vincent Kersten
for the report.
* Move upstream meta data to debian/upstream/metadata.
* Drop embeded excanvas javascript library in favor of a dependency on
libjs-excanvas.
2015-03-04 - Yaroslav Halchenko <debian@onerussian.com>
fsl (5.0.8-3) UNRELEASED; urgency=medium
* fsl_app_wrapper - wrap $@ into "" to pass arguments correctly into
original utility
2015-01-16 - Michael Hanke <mih@debian.org>
fsl (5.0.8-2) experimental; urgency=medium
* Include upstream patch to prevent a crash in the FEAT component.
2014-12-21 - Michael Hanke <mih@debian.org>
fsl (5.0.8-1) unstable; urgency=medium
* New upstream release.
- New command 'fslselectvols' to select a (non-contiguous) subset of
volumes from a 4D image.
- New '-kernel boxv3' option for fslmaths.
- New '--minextent' option for cluster.
- Bugfix for header information of topup output files.
- FEAT has improved handling of non-fatal error conditions.
- Bugfix for asl_calib script.
- Bugfix for missing images in the VIENA report.
- All FSL scripts now internally set their locale to C.
- A potential race condition with multiple calls to maskdyads or slices has
been corrected.
- FDR now saves adjusted values as 1-p if the input is 1-p.
* Refresh patches and remove one resolved bashism fix.
2014-07-23 - Michael Hanke <mih@debian.org>
fsl (5.0.7-4) unstable; urgency=medium
* Fix FTBFS on kfreebsd: Disable 'stack_dump' component that is "highly
non-portable" and can be replaced, if necessary, with plain gdb.
* Fix another bashism in the *monitor script generated by bedpostx.
2014-07-20 - Michael Hanke <mih@debian.org>
fsl (5.0.7-3) unstable; urgency=medium
* Improve FSL's build configuration to not treat any non-Linux platform
as a Mac (Closes: #755356).

See Also

Package Description
fsl_5.0.8-6_all.deb transitional dummy package
gawk-doc_4.2.1-1_all.deb Documentation for GNU awk
gccintro_1.0-4_all.deb Introduction to GCC by Brian J. Gough
gdb-doc_8.2.1-1_all.deb The GNU Debugger Documentation
glibc-doc-reference_2.28-1_all.deb GNU C Library: Documentation
gliese_3.0.95-2_all.deb stellar data set from the Third Catalogue of Nearby Stars
gmap_2019-01-24-1_amd64.deb spliced and SNP-tolerant alignment for mRNA and short reads
gmp-doc_6.1.2-1_all.deb GMP (Multiprecision arithmetic library) documentation
grr-client-templates_3.1.0.2-2_all.deb incident response framework - pre-built client templates
gsfonts-other_6.0-4_all.deb Additional fonts for the ghostscript interpreter
gsl-doc-info_2.3-1_all.deb GNU Scientific Library (GSL) Reference Manual in info
gsl-doc-pdf_2.3-1_all.deb GNU Scientific Library (GSL) Reference Manual in pdf
gsl-ref-html_2.3-1_all.deb GNU Scientific Library (GSL) Reference Manual in html
gsl-ref-psdoc_2.3-1_all.deb GNU Scientific Library (GSL) Reference Manual in postscript
hevea-doc_2.32-1_all.deb HeVeA documentation
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