fasta3_36.3.8g-1_amd64.deb


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Description

fasta3 - tools for searching collections of biological sequences

Property Value
Distribution Debian 10 (Buster)
Repository Debian Nonfree amd64
Package filename fasta3_36.3.8g-1_amd64.deb
Package name fasta3
Package version 36.3.8g
Package release 1
Package architecture amd64
Package type deb
Category non-free/science
Homepage http://fasta.bioch.virginia.edu
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 843.03 KB
Installed size 5.52 MB
The FASTA programs find regions of local or global similarity between
Protein or DNA sequences, either by searching Protein or DNA databases,
or by identifying local duplications within a sequence. Other
programs provide information on the statistical significance of an
alignment. Like BLAST, FASTA can be used to infer functional and
evolutionary relationships between sequences as well as help identify
members of gene families.
* Protein
- Protein-protein FASTA
- Protein-protein Smith-Waterman (ssearch)
- Global Protein-protein (Needleman-Wunsch) (ggsearch)
- Global/Local protein-protein (glsearch)
- Protein-protein with unordered peptides (fasts)
- Protein-protein with mixed peptide sequences (fastf)
* Nucleotide
- Nucleotide-Nucleotide (DNA/RNA fasta)
- Ordered Nucleotides vs Nucleotide (fastm)
- Un-ordered Nucleotides vs Nucleotide (fasts)
* Translated
- Translated DNA (with frameshifts, e.g. ESTs)
vs Proteins (fastx/fasty)
- Protein vs Translated DNA (with frameshifts)
(tfastx/tfasty)
- Peptides vs Translated DNA (tfasts)
* Statistical Significance
- Protein vs Protein shuffle (prss)
- DNA vs DNA shuffle (prss)
- Translated DNA vs Protein shuffle (prfx)
* Local Duplications
- Local Protein alignments (lalign)
- Plot Protein alignment "dot-plot" (plalign)
- Local DNA alignments (lalign)
- Plot DNA alignment "dot-plot" (plalign)

Alternatives

Package Version Architecture Repository
fasta3 - - -

Requires

Name Value
libc6 >= 2.14
zlib1g >= 1:1.1.4

Download

Type URL
Mirror ftp.br.debian.org
Binary Package fasta3_36.3.8g-1_amd64.deb
Source Package fasta3

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install fasta3 deb package:
    # sudo apt-get install fasta3

Files

Path
/usr/bin/fasta36
/usr/bin/fastf36
/usr/bin/fastm36
/usr/bin/fasts36
/usr/bin/fastx36
/usr/bin/fasty36
/usr/bin/ggsearch36
/usr/bin/glsearch36
/usr/bin/lalign36
/usr/bin/map_db
/usr/bin/ssearch36
/usr/bin/tfastf36
/usr/bin/tfastm36
/usr/bin/tfasts36
/usr/bin/tfastx36
/usr/bin/tfasty36
/usr/share/doc/fasta3/README
/usr/share/doc/fasta3/README.versions
/usr/share/doc/fasta3/README_v36.3.8d.md
/usr/share/doc/fasta3/README_v36.3.8g.md
/usr/share/doc/fasta3/changelog.Debian.gz
/usr/share/doc/fasta3/changes_v34.html
/usr/share/doc/fasta3/changes_v35.html
/usr/share/doc/fasta3/changes_v36.html
/usr/share/doc/fasta3/copyright
/usr/share/doc/fasta3/fasta_guide.pdf
/usr/share/doc/fasta3/readme.v30
/usr/share/doc/fasta3/readme.v30t6
/usr/share/doc/fasta3/readme.v30t7.gz
/usr/share/doc/fasta3/readme.v31t0.gz
/usr/share/doc/fasta3/readme.v31t1
/usr/share/doc/fasta3/readme.v32t0.gz
/usr/share/doc/fasta3/readme.v33t0.gz
/usr/share/doc/fasta3/readme.v34t0.gz
/usr/share/doc/fasta3/readme.v35.gz
/usr/share/doc/fasta3/readme.v36.gz
/usr/share/doc/fasta3/readme.w32
/usr/share/man/man1/fasta36.1.gz
/usr/share/man/man1/fastf3.1.gz
/usr/share/man/man1/fasts3.1.gz
/usr/share/man/man1/map_db.1.gz
/usr/share/man/man1/prss3.1.gz
/usr/share/man/man1/ps_lav.1.gz

Changelog

2018-04-15 - Steffen Moeller <moeller@debian.org>
fasta3 (36.3.8g-1) unstable; urgency=low
[ Andreas Tille ]
* Moved packaging from SVN to Git
[ Steffen Moeller]
* Initial release (Closes: #895740)
* New upstream version.
* Fixed remaining lintian error.
* Bumped policy to 4.1.4.
[ Alexandre Mestiashvili]
* Add zlib1g-dev to Build-Depends
* Apply cme fix dpkg, fixing indentation, secure url and patch descriptions

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