cluster3 - Reimplementation of the Eisen-clustering software

Property Value
Distribution Debian 10 (Buster)
Repository Debian Nonfree amd64
Package filename cluster3_1.57-1_amd64.deb
Package name cluster3
Package version 1.57
Package release 1
Package architecture amd64
Package type deb
Category non-free/science
License -
Maintainer Debian Med Packaging Team <>
Download size 883.82 KB
Installed size 1.15 MB
The open source clustering software available here contains clustering
routines that can be used to analyze gene expression data. Routines for
hierarchical (pairwise simple, complete, average, and centroid linkage)
clustering, k-means and k-medians clustering, and 2D self-organizing maps
are included. The routines are available in the form of a C clustering
library, an extension module to Python, a module to Perl, as well as an
enhanced version of Cluster, which was originally developed by Michael
Eisen of Berkeley Lab. The C clustering library and the associated
extension module for Python was released under the Python license. The
Perl module was released under the Artistic License. Cluster 3.0 is
covered by the original Cluster/TreeView license.
This package only contains the command line and motif gui versions
of Cluster 3.0.


Package Version Architecture Repository
cluster3 - - -


Name Value
libc6 >= 2.14
libice6 >= 1:1.0.0
libsm6 -
libx11-6 -
libxext6 -
libxm4 >= 2.3.4
libxt6 -


Type URL
Binary Package cluster3_1.57-1_amd64.deb
Source Package cluster3

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install cluster3 deb package:
    # sudo apt-get install cluster3




2019-01-27 - Steffen Moeller <>
cluster3 (1.57-1) unstable; urgency=medium
* New upstream version.
* Standards-Version: 4.3.0 - no changes reguired
* d/u/metadata: yamllint
* d/rules: acivated link-time optimisation, which reduced the size of
both cluster3 and xcluster3 by ~25K each (down from 100K and 160K).
2018-10-20 - Jelmer Vernooń≥ <>
cluster3 (1.56-2) UNRELEASED; urgency=medium
* Use secure copyright file specification URI.
* Trim trailing whitespace.
2018-09-27 - Andreas Tille <>
cluster3 (1.56-1) unstable; urgency=medium
* New upstream version
* debhelper 11
* Point Vcs fields to
* Standards-Version: 4.2.1
* Remove unnecessary get-orig-source target
* XS-Autobuild: s/no/yes/
2017-09-14 - Andreas Tille <>
cluster3 (1.53-1) unstable; urgency=medium
* New upstream version
* Fix homepage and watch file
* Move packaging from SVN to Git
* Standards-Version: 4.1.0 (no changes needed)
* debhelper 10
* d/rules: short dh
* hardening=+all
2014-10-11 - Andreas Tille <>
cluster3 (1.52a-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
2013-09-26 - Thorsten Alteholz <>
cluster3 (1.52-2) unstable; urgency=low
* add patch from Stefano Rivera (build on armhf) (Closes: #723561)
2013-09-16 - Thorsten Alteholz <>
cluster3 (1.52-1) unstable; urgency=low
* rebuild needed for motif transition (Closes: #713062)
* New upstream release (1.52)
* debian/xcluster3.sgml: fix errors
* debian/control: canonical vcs-* fields
* debin/control: bumped to 3.9.4 (no changes)
2012-07-18 - Thorsten Alteholz <>
cluster3 (1.50-1) unstable; urgency=low
[ Thorsten Alteholz ]
* New upstream release (1.50).
* debian/rules: target get-orig-source added
[ Steffen Moeller ]
* New upstream release (1.40).
* Improved on debian/rules.
* Finally submitted ITP (Closes: Bug#286167).
[ Charles Plessy ]
* Initial release.
* Manpage built before source package generation, removed docbook-to-man
build dependency.
2004-04-07 - Steffen Moeller <>
cluster3 (1.25-0.2) UNRELEASED; urgency=low
* Provides both the motif gui and command line interface.
2004-04-06 - Steffen Moeller <>
cluster3 (1.25-0.1) UNRELEASED; urgency=low
* Initial Release.

See Also

Package Description
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cufflinks_2.2.1+dfsg.1-3+b1_amd64.deb Transcript assembly, differential expression and regulation for RNA-Seq
cuneiform-common_1.1.0+dfsg-7_all.deb multi-language OCR system (common)
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dahdi-firmware-nonfree_2. DAHDI non-free firmware
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doc-rfc-experimental_20181229-2_all.deb Experimental RFCs
doc-rfc-fyi-bcp_20181229-2_all.deb FYI and BCP RFCs
doc-rfc-informational_20181229-2_all.deb Informational RFCs
doc-rfc-misc_20181229-2_all.deb Historic and draft RFCs
doc-rfc-old-std_20181229-2_all.deb Old Standard RFCs