yaha_0.1.83-1_i386.deb


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Description

yaha - find split-read mappings on single-end queries

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename yaha_0.1.83-1_i386.deb
Package name yaha
Package version 0.1.83
Package release 1
Package architecture i386
Package type deb
Category science
Homepage https://github.com/GregoryFaust/yaha
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 44.91 KB
Installed size 112.00 KB
yaha is an open source, flexible, sensitive and accurate DNA aligner
designed for single-end reads. It supports three major modes of
operation:
* The default “Optimal Query Coverage” (-OQC) mode reports the
best set of alignments that cover the length of each query.
* Using “Filter By Similarity” (-FBS), along with the best set of
alignments, yaha will also output alignments that are highly similar
to an alignment in the best set.
* Finally, yaha can output all the alignments found for each query.
The -OQC and -FBS modes are specifically tuned to form split read
mappings that can be used to accurately identify structural variation
events (deletions, duplications, insertions or inversions) between the
subject query and the reference genome.

Alternatives

Package Version Architecture Repository
yaha_0.1.83-1_amd64.deb 0.1.83 amd64 Debian Main
yaha - - -

Requires

Name Value
libc6 >= 2.4

Download

Type URL
Mirror ftp.br.debian.org
Binary Package yaha_0.1.83-1_i386.deb
Source Package yaha

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install yaha deb package:
    # sudo apt-get install yaha

Files

Path
/usr/bin/yaha
/usr/share/doc/yaha/changelog.Debian.gz
/usr/share/doc/yaha/copyright
/usr/share/man/man1/yaha.1.gz

Changelog

2018-07-11 - Steffen Moeller <moeller@debian.org>
yaha (0.1.83-1) unstable; urgency=medium
* Initial release (Closes: #903602)

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