sigma-align_1.1.3-6_i386.deb


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Description

sigma-align - Simple greedy multiple alignment of non-coding DNA sequences

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename sigma-align_1.1.3-6_i386.deb
Package name sigma-align
Package version 1.1.3
Package release 6
Package architecture i386
Package type deb
Category field::biology field::biology:bioinformatics implemented-in::c interface::commandline role::program science scope::utility use::analysing use::comparing works-with-format::plaintext works-with::TODO
Homepage http://www.imsc.res.in/~rsidd/sigma/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 24.24 KB
Installed size 61.00 KB
Sigma (“Simple greedy multiple alignment”) is an alignment program. It's
algorithm and scoring scheme are designed specifically for non-coding
DNA sequence.
It uses a strategy of seeking the best possible gapless local
alignments. This happens at each step making the best possible alignment
consistent with existing alignments. It scores the significance of the
alignment based on the lengths of the aligned fragments and a background
model. These may be supplied or estimated from an auxiliary file of
intergenic DNA.

Alternatives

Package Version Architecture Repository
sigma-align_1.1.3-6_amd64.deb 1.1.3 amd64 Debian Main
sigma-align - - -

Requires

Name Value
libc6 >= 2.4
libglib2.0-0 >= 2.12.0

Download

Type URL
Mirror ftp.br.debian.org
Binary Package sigma-align_1.1.3-6_i386.deb
Source Package sigma-align

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install sigma-align deb package:
    # sudo apt-get install sigma-align

Files

Path
/usr/bin/sigma
/usr/share/doc/sigma-align/NOTES
/usr/share/doc/sigma-align/README
/usr/share/doc/sigma-align/changelog.Debian.gz
/usr/share/doc/sigma-align/changelog.gz
/usr/share/doc/sigma-align/copyright
/usr/share/man/man1/sigma.1.gz

Changelog

2018-10-19 - Andreas Tille <tille@debian.org>
sigma-align (1.1.3-6) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
2017-11-13 - Andreas Tille <tille@debian.org>
sigma-align (1.1.3-5) unstable; urgency=medium
* Moved packaging from SVN to Git
* Standards-Version: 4.1.1
* debhelper 10
* Secure URI in watch file
2016-01-11 - Andreas Tille <tille@debian.org>
sigma-align (1.1.3-4) unstable; urgency=medium
* Moved refrence data to debian/upstream/metadata
* cme fix dpkg-control
* debhelper 9
* Remove debian/reference which is redundant to debian/upstream/metadata
2011-12-24 - Andreas Tille <tille@debian.org>
sigma-align (1.1.3-3) unstable; urgency=low
* Fix bug in long description
Closes: #652922
2011-12-16 - Andreas Tille <tille@debian.org>
sigma-align (1.1.3-2) unstable; urgency=low
[ Charles Plessy ]
* Documented information in ‘debian/upstream-metadata.yaml’.
* Converted debian/copyright to machine-readable format version 1.0.
[Steffen Möller]
* Split long description in two (Closes: #644663)
[ Andreas Tille ]
* debian/control:
- Fixed Vcs fields
- Standards-Version incremented to reflect compliance with Policy 3.9.2.
- Long description less than 80 characters per line
* Source format 3.0 (quilt)
* debian/rules: dh instead of cdbs
* Debhelper 8 (control+compat)
2009-04-27 - Charles Plessy <plessy@debian.org>
sigma-align (1.1.3-1) unstable; urgency=low
* New upstream release.
* Converted the packaging to CDBS.
- debian/rules is much shorter.
- CDBS will take care of updating config.guess and config.sub.
- Created debian/docs and debian/manpages.
* debian/control:
- Updated my email address.
- Incremented Standards-Version to reflect conformance with Policy 3.8.1 (no
changes needed).
- Depend on debhelper 7, cdbs and autotools-dev
- Moved bibliographic information to debian/reference.
- Use nice Unicode English quotes in the long descriptions.
* debian/copyright:
- Updated to latest version of the machine-readable format.
- Incremented years and updated my email address.
* Using debhelper 7 (debian/compat).
2008-03-18 - Andreas Tille <tille@debian.org>
sigma-align (1.1.1-3) unstable; urgency=low
[ Nelson A. de Oliveira ]
* Added watch file.
[ David Paleino ]
* debian/rules: failsafe $(MAKE) distclean.
* Updated to Standards-Version 3.7.3 (no changes needed)
[ Charles Plessy ]
* debian/control:
- Moved the Homepage: field out from the package's description.
- Updated the VCS fields by removing their XS- prefix.
- Suppressed an unclear sentence from the description.
[ Andreas Tille ]
* Added myself to uploaders
2007-07-26 - Charles Plessy <charles-debian-nospam@plessy.org>
sigma-align (1.1.1-2) unstable; urgency=low
* Removed obsolete manpage in the debian directory.
* Not rebuilding the manpage, and dropping corresponding
build-dependencies.
2007-04-08 - Charles Plessy <charles-debian-nospam@plessy.org>
sigma-align (1.1.1-1) unstable; urgency=low
* New upstream release.
- 1.1 : complete rewrite in C.
- 1.1.1 : fixes a building problem on powerpc.
* Manpage adopted and updated by the upstream author of Sigma.
* Add Subversion repository URL to debian/control.
2006-09-05 - Charles Plessy <charles-debian-nospam@plessy.org>
sigma-align (1.0-1) unstable; urgency=low
* Initial release Closes: #378289

See Also

Package Description
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signify-openbsd-keys_2018.4_all.deb Public keys for use with signify-openbsd
signify-openbsd_24-1_i386.deb Lightweight cryptographic signing and verifying tool
signify_1.14-3_all.deb Automatic, semi-random ".signature" rotator/generator
signing-party_2.10-2_i386.deb Various OpenPGP related tools
signon-kwallet-extension_17.08.3-1_i386.deb KWallet extension for signond
signon-plugin-oauth2-dev_0.22-1_i386.deb oauth2 plugin for accounts single sign on framework - headers
signon-plugin-oauth2_0.22-1_i386.deb oauth2 plugin for accounts single sign on framework
signon-plugin-password_8.59-2_i386.deb Single Sign On framework - Plain Password plugin
signon-plugin-ssotest_8.59-2_i386.deb Single Sign On framework - Test plugin
signon-plugins-dev_8.59-2_i386.deb Single Sign On framework - plugins development files
signon-ui-service_0.17+15.10.20150810-2_all.deb D-Bus service file for signon-ui
signon-ui-x11_0.17+15.10.20150810-2+b1_i386.deb Single Sign-on UI
signond-dev_8.59-2_i386.deb Single Sign On framework - development files
signond-doc_8.59-2_all.deb Single Sign On framework - documentation for daemon
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