sibsim4_0.20-4_i386.deb


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Description

sibsim4 - align expressed RNA sequences on a DNA template

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename sibsim4_0.20-4_i386.deb
Package name sibsim4
Package version 0.20
Package release 4
Package architecture i386
Package type deb
Category field::biology field::biology:bioinformatics implemented-in::c interface::commandline role::program science scope::utility use::TODO use::comparing use::searching works-with-format::TODO works-with-format::plaintext works-with::TODO
Homepage http://sibsim4.sourceforge.net/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 31.00 KB
Installed size 79.00 KB
The SIBsim4 project is based on sim4, which is a program designed to align
an expressed DNA sequence with a genomic sequence, allowing for introns.
SIBsim4 is a fairly extensive rewrite of the original code with the following
goals:
* speed improvement;
* allow large, chromosome scale, DNA sequences to be used;
* provide more detailed output about splice types;
* provide more detailed output about polyA sites;
* misc code cleanups and fixes.

Alternatives

Package Version Architecture Repository
sibsim4_0.20-4_amd64.deb 0.20 amd64 Debian Main
sibsim4 - - -

Requires

Name Value
libc6 >= 2.4

Download

Type URL
Mirror ftp.br.debian.org
Binary Package sibsim4_0.20-4_i386.deb
Source Package sibsim4

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install sibsim4 deb package:
    # sudo apt-get install sibsim4

Files

Path
/usr/bin/SIBsim4
/usr/share/doc/sibsim4/README.Debian
/usr/share/doc/sibsim4/changelog.Debian.gz
/usr/share/doc/sibsim4/copyright
/usr/share/man/man1/SIBsim4.1.gz

Changelog

2018-10-24 - Andreas Tille <tille@debian.org>
sibsim4 (0.20-4) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
2017-11-18 - Andreas Tille <tille@debian.org>
sibsim4 (0.20-3) unstable; urgency=medium
* Moved packaging from SVN to Git
* debhelper 10
* Standards-Version: 4.1.1
* DEP5
2013-11-05 - Andreas Tille <tille@debian.org>
sibsim4 (0.20-2) unstable; urgency=low
* debian/control:
- cme fix dpkg-control
- canonical Vcs URLs
- debhelper 9
* debian/rules: cdbs -> dh
* debian/README.Debian: Took over some information from debian/copyright
which actually belongs here
* debian/copyright: DEP5
* debian/patches/hardening.patch: Propagate hardening options
2010-04-28 - Andreas Tille <tille@debian.org>
sibsim4 (0.20-1) unstable; urgency=low
* New upstream version
* Added myself to uploaders
* Standards-Version: 3.8.4 (no changes needed)
* Source-Format: 3.0 (quilt)
* Debhalper 7
2008-05-17 - Nelson A. de Oliveira <naoliv@debian.org>
sibsim4 (0.17-1) unstable; urgency=low
* New upstream release.
2007-12-18 - Nelson A. de Oliveira <naoliv@debian.org>
sibsim4 (0.16-1) unstable; urgency=low
[ Charles Plessy ]
* Moved the Homepage: field out from the package's description;
* Updated Vcs-* fields in debian/control;
* Added DM-Upload-Allowed.
[ Nelson A. de Oliveira ]
* New upstream release;
* Updated Standards Version to 3.7.3;
* Removed unused debian/patches.
2007-04-28 - Nelson A. de Oliveira <naoliv@debian.org>
sibsim4 (0.15-2) unstable; urgency=low
[ Nelson A. de Oliveira ]
* I need to verify SVN before modifying a package...
[ Charles Plessy ]
* Add Subversion repository URL to debian/control.
2007-04-28 - Nelson A. de Oliveira <naoliv@debian.org>
sibsim4 (0.15-1) unstable; urgency=low
* New upstream release.
2007-01-10 - Nelson A. de Oliveira <naoliv@debian.org>
sibsim4 (0.14-1) unstable; urgency=low
* Initial release (Closes: #406286).

See Also

Package Description
sic_1.1-5_i386.deb simple irc client (sic)
sickle_1.33+git20150314.f3d6ae3-1_i386.deb windowed adaptive trimming tool for FASTQ files using quality
sidedoor-sudo_0.2.1-1_all.deb SSH connection daemon - sudoers entry
sidedoor_0.2.1-1_all.deb SSH connection daemon
sidplay-base_1.0.9-7+b1_i386.deb Music player for tunes from C64 and C128 (console)
sidplay_2.0.9-6+b2_i386.deb Music player for tunes from C64 and C128 (console)
sidplayfp_1.4.4-1_i386.deb Fork of sidplay2, a C64 and C128 music player
siege_4.0.4-1_i386.deb HTTP regression testing and benchmarking utility
sieve-connect_0.88-1_all.deb MANAGESIEVE protocol client
siggen_2.3.10-8_i386.deb Waveform generation tools
sigil-data_0.9.13+dfsg-1_all.deb multi-platform ebook editor - data files
sigil_0.9.13+dfsg-1_i386.deb multi-platform ebook editor
sigma-align_1.1.3-6_i386.deb Simple greedy multiple alignment of non-coding DNA sequences
signapk_8.1.0+r23-2_all.deb Command line tool for signing Android ZIP/JAR/APK
signify-openbsd-keys_2018.4_all.deb Public keys for use with signify-openbsd
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