rdp-classifier_2.10.2-4_all.deb


Advertisement

Description

rdp-classifier - extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename rdp-classifier_2.10.2-4_all.deb
Package name rdp-classifier
Package version 2.10.2
Package release 4
Package architecture all
Package type deb
Category science
Homepage https://github.com/rdpstaff/classifier
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 222.14 KB
Installed size 262.00 KB
The RDP Classifier is a naive Bayesian classifier which was developed
to provide rapid taxonomic placement based on rRNA sequence data. The
RDP Classifier can rapidly and accurately classify bacterial and
archaeal 16s rRNA sequences, and Fungal LSU sequences. It provides
taxonomic assignments from domain to genus, with confidence estimates
for each assignment. The RDP Classifier likely can be adapted to
additional phylogenetically coherent bacterial taxonomies.

Alternatives

Package Version Architecture Repository
rdp-classifier_2.10.2-4_all.deb 2.10.2 all Debian Main
rdp-classifier - - -

Requires

Name Value
default-jre -
libcommons-cli-java -
librdp-taxonomy-tree-java -
rdp-readseq -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package rdp-classifier_2.10.2-4_all.deb
Source Package rdp-classifier

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install rdp-classifier deb package:
    # sudo apt-get install rdp-classifier

Files

Path
/usr/bin/rdp_classifier
/usr/share/doc/rdp-classifier/README.Debian
/usr/share/doc/rdp-classifier/README.gz
/usr/share/doc/rdp-classifier/changelog.Debian.gz
/usr/share/doc/rdp-classifier/copyright
/usr/share/doc/rdp-classifier/examples/testQuerySeq.fasta
/usr/share/java/rdp_classifier.jar
/usr/share/man/man1/rdp_classifier.1.gz
/usr/share/rdp-classifier/fetch_fungal_data.sh
/usr/share/rdp-classifier/rdp_classifier.jar

Changelog

2018-11-05 - Olivier Sallou <osallou@debian.org>
rdp-classifier (2.10.2-4) unstable; urgency=medium
* Fix openjdk 11 FTBS (java.se.ee deprecated in jdk 11) Closes #912385 
2018-10-04 - Andreas Tille <tille@debian.org>
rdp-classifier (2.10.2-3) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Drop unneeded get-orig-source target
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test
2017-09-15 - Olivier Sallou <osallou@debian.org>
rdp-classifier (2.10.2-2) unstable; urgency=medium
* Team upload
[ Olivier Sallou ]
* d/control,d/junit.xml: fixes for Java 9 compilation (Closes: #875789).
* debian/bin/rdp_classifier: add optional env variable JAVA_OPTS
to java command line
[ Andreas Tille ]
* Move packaging from SVN to Git
* debhelper 10
* cme fix dpkg-control
* Standards-Version: 4.1.0 (no changes needed)
2015-07-03 - Andreas Tille <tille@debian.org>
rdp-classifier (2.10.2-1) unstable; urgency=medium
* Initial upload to Debian (Closes: #790926)
2015-02-19 - Tim Booth <tbooth@ceh.ac.uk>
rdp-classifier (2.10.1+dfsg-0biolinux1) trusty; urgency=medium
* New usptream
2014-10-06 - Tim Booth <tbooth@ceh.ac.uk>
rdp-classifier (2.9+dfsg-0biolinux1) trusty; urgency=medium
* New upstream
* Needs updated librdp-readseq-java, librdp-taxonomy-tree-java and new
librdp-alignment-java
* The new distribution includes too much identification data to package.
* Just include the 16S data in the package.  Provide a script to get the
fungal data and put it in the right place.  Modify the command line to
see data in ~/rdp_classifier/data
2014-04-30 - Tim Booth <tbooth@ceh.ac.uk>
rdp-classifier (2.7+dfsg-0biolinux1) trusty; urgency=low
* New upstream and build for Trusty
* Add deps on two librdp packages
* Add unit tests
* Move data out of the .jar
* Move some things around
2012-08-14 - Tim Booth <tbooth@ceh.ac.uk>
rdp-classifier (2.5~dfsg-0ubuntu) precise; urgency=low
* Rebuild version 2.5 (for Ubuntu)
* Try to do proper build but there is missing source! - see README.source
* Make use of JavaHelper for deps
* Add wrapper script in /usr/bin to run the app (from BL)
* Split out separate -doc package

See Also

Package Description
rdp-readseq_2.0.2-6_all.deb Ribosomal Database Project (RDP) sequence reading and writing
rdtool-elisp_0.6.38-4_all.deb Emacs-lisp rd-mode for writing RD document
rdtool_0.6.38-4_all.deb RD document formatter
rdup_1.1.15-1_i386.deb utility to create a file list suitable for making backups
re2c_1.1.1-1_i386.deb tool for generating fast C-based recognizers
re_0.1-7_i386.deb Russian Anywhere -- Russian text converter
read-edid_3.0.2-1+b1_i386.deb hardware information-gathering tool for VESA PnP monitors
readline-common_7.0-5_all.deb GNU readline and history libraries, common files
readline-doc_7.0-5_all.deb GNU readline and history libraries, documentation and examples
readseq_1-13_i386.deb Conversion between sequence formats
realmd_0.16.3-2_i386.deb DBus service for configuring kerberos and other online identities
rear-doc_2.4+dfsg-1_all.deb Bare metal disaster recovery and system migration framework (documentation)
rear_2.4+dfsg-1_i386.deb Bare metal disaster recovery and system migration framework
reaver_1.6.5-1_i386.deb brute force attack tool against Wifi Protected Setup PIN number
rebar_2.6.4-2_i386.deb Sophisticated build-tool for Erlang projects that follows OTP principles
Advertisement
Advertisement