rapmap-example-data_0.12.0+dfsg-3_all.deb


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Description

rapmap-example-data - example data for rapmap - rapid sensitive and accurate DNA read mapping

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename rapmap-example-data_0.12.0+dfsg-3_all.deb
Package name rapmap-example-data
Package version 0.12.0+dfsg
Package release 3
Package architecture all
Package type deb
Category science
Homepage https://github.com/COMBINE-lab/RapMap
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 402.15 KB
Installed size 419.00 KB
RapMap is a testing ground for ideas in quasi-mapping / (lightweight /
pseudo) transcriptome alignment. That means that, at this point, it is
somewhat experimental. The develop branch will have the latest
improvements and additions, but is not guaranteed to be stable between
commits. Breaking changes to the master branch will be accompanied by a
tag to the version before the breaking change. Currently, RapMap is a
stand-alone quasi-mapper that can be used with other tools. It is also
being used as part of Sailfish and Salmon. Eventually, the hope is to
create and stabilize an API so that it can be used as a library from
other tools.
This package contains example data to test this program.

Alternatives

Package Version Architecture Repository
rapmap-example-data_0.12.0+dfsg-3_all.deb 0.12.0+dfsg all Debian Main
rapmap-example-data - - -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package rapmap-example-data_0.12.0+dfsg-3_all.deb
Source Package rapmap

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install rapmap-example-data deb package:
    # sudo apt-get install rapmap-example-data

Files

Path
/usr/share/doc/rapmap/README.test
/usr/share/doc/rapmap/run-unit-test
/usr/share/doc/rapmap-example-data/changelog.Debian.gz
/usr/share/doc/rapmap-example-data/copyright
/usr/share/doc/rapmap/examples/reads_1.fastq.gz
/usr/share/doc/rapmap/examples/reads_2.fastq.gz
/usr/share/doc/rapmap/examples/transcripts.fasta.gz

Changelog

2019-01-02 - Michael R. Crusoe <michael.crusoe@gmail.com>
rapmap (0.12.0+dfsg-3) unstable; urgency=medium
* debian/patches/portable_pause: add ppc64el and arm64 alternatives to
asm("pause").
* debian/patches/no_gomp_needed: Avoid unnecessary linkage to gomp.
2018-12-13 - Andreas Tille <tille@debian.org>
rapmap (0.12.0+dfsg-2) unstable; urgency=medium
* Add further header files to rapmap-dev since these are used in salmon
2018-12-12 - Andreas Tille <tille@debian.org>
rapmap (0.12.0+dfsg-1) unstable; urgency=medium
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Remove trailing whitespace in debian/rules
* For some reason rapmap releases are prefixed by "salmon-" - adapt
watch file
* Do not exclude spdlog any more as long as it is not ported to
version spdlog 1.2.x
Closes: #909766
* Add rapmap-dev package to simplify building salmon and avoid code
duplication in salmon package source
* Lintian override for script-with-language-extension
* Avoid privacy breach
2018-01-12 - Katerina Kalou <aik.kalou@gmail.com>
rapmap (0.5.0+dfsg-3) unstable; urgency=medium
* Team upload
[ Andreas Tille ]
* Add binary package containing example data
* debhelper 11
* Standards-Version: 4.1.3
[ Katerina Kalou ]
* Provide autopkgtest
Closes: #879616
2017-12-13 - Gert Wollny <gewo@debian.org>
rapmap (0.5.0+dfsg-2) unstable; urgency=medium
* Team upload.
* d/p/libspdlog: Correct instanziation of ansicolor sink, Closes: #884218
2017-10-22 - Steffen Moeller <moeller@debian.org>
rapmap (0.5.0+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version.
* Added references to registries.
* Bumped policy to 4.1.1.1 (no changes required).
* Removing files created during build in debian/rules clean target
2016-12-05 - Andreas Tille <tille@debian.org>
rapmap (0.4.0+dfsg-2) unstable; urgency=medium
* Set NO_NATIVE_ARCH=true
Closes: #847084
* Do not try downloading libjemalloc
Closes: #847083
* debhelper 10
* d/watch: version=4
* hardening=+all
2016-10-17 - Andreas Tille <tille@debian.org>
rapmap (0.4.0+dfsg-1) unstable; urgency=medium
* New upstream version
* Prefer dynamic to static libraries
2016-09-07 - Andreas Tille <tille@debian.org>
rapmap (0.3.0+dfsg-1) unstable; urgency=medium
* Initial release (Closes: #836914)

See Also

Package Description
raptor2-utils_2.0.14-1+b1_i386.deb Raptor 2 RDF parser and serializer utilities
rarcrack_0.2-1+b1_i386.deb Password cracker for rar archives
rarpd_0.981107-9+b1_i386.deb Reverse Address Resolution Protocol daemon
rasdaemon_0.6.0-1.2_i386.deb utility to receive RAS error tracings
rasmol-doc_2.7.6.0-1_all.deb documentation for rasmol
rasmol_2.7.6.0-1_i386.deb visualization of biological macromolecules
raspell_1.3-1+b9_i386.deb interface binding for the Aspell spelling checker
rasqal-utils_0.9.32-1+b1_i386.deb Rasqal RDF Query utilities
raster3d-doc_3.0-3-5_all.deb documents and example files for Raster3D
raster3d_3.0-3-5_i386.deb tools for generating images of proteins or other molecules
rasterio_1.0.21-1_all.deb Command line tool for investigating geospatial rasters
rasterlite2-bin_1.1.0~beta0+really1.0.0~rc0+devel1-2_i386.deb command line tools for librasterlite2
ratbagd_0.9.905-1_i386.deb D-Bus daemon handling mouse configuration
rate4site_3.0.0-6_i386.deb detector of conserved amino-acid sites
ratfor_1.0-16_i386.deb Rational Fortran preprocessor for Fortran 77
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