rambo-k_1.21+dfsg-2_all.deb


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Description

rambo-k - Read Assignment Method Based On K-mers

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename rambo-k_1.21+dfsg-2_all.deb
Package name rambo-k
Package version 1.21+dfsg
Package release 2
Package architecture all
Package type deb
Category science
Homepage http://rambok.sourceforge.net/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 1.11 MB
Installed size 1.35 MB
RAMBO-K is a tool for rapid and sensitive removal of background sequences
from Next Generation Sequencing data.
RAMBO-K is a reference-based tool for rapid and sensitive extraction of
one organisms reads from a mixed dataset. It is based on a Markov chain
implementation, which uses genomic characteristics of each reference to
assign reads to the associated set.

Alternatives

Package Version Architecture Repository
rambo-k_1.21+dfsg-2_all.deb 1.21+dfsg all Debian Main
rambo-k - - -

Requires

Name Value
libcommons-cli-java -
python-sklearn -
python:any -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package rambo-k_1.21+dfsg-2_all.deb
Source Package rambo-k

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install rambo-k deb package:
    # sudo apt-get install rambo-k

Files

Path
/usr/bin/rambo-k
/usr/share/doc-base/rambo-k
/usr/share/doc/rambo-k/Readme.pdf
/usr/share/doc/rambo-k/Readme.txt.gz
/usr/share/doc/rambo-k/changelog.Debian.gz
/usr/share/doc/rambo-k/copyright
/usr/share/man/man1/rambo-k.1.gz
/usr/share/python/runtime.d/rambo-k.rtupdate
/usr/share/rambo-k/RAMBOK.py
/usr/share/rambo-k/classifier-1.21.jar
/usr/share/rambo-k/classifier.jar
/usr/share/rambo-k/plot.py
/usr/share/rambo-k/simulate_reads.py
/usr/share/rambo-k/trainer-1.21.jar
/usr/share/rambo-k/trainer.jar

Changelog

2018-07-19 - Andreas Tille <tille@debian.org>
rambo-k (1.21+dfsg-2) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* Remove ancient X-Python-Version field
* Build-Depends: dh-python
* d/rules: do not parse d/changelog
2016-11-21 - Andreas Tille <tille@debian.org>
rambo-k (1.21+dfsg-1) unstable; urgency=low
* Initial release (Closes: #844996)

See Also

Package Description
ramond_0.5-4_i386.deb IPv6 Router Advertisement MONitoring Daemon
rampler_1.1.0-1_i386.deb module for sampling genomic sequences
rancid-cgi_3.9-1_all.deb looking glass CGI based on rancid tools
rancid_3.9-1_i386.deb Really Awesome New Cisco confIg Differ
randomplay_0.60+pristine-1_all.deb command-line based shuffle music player that remembers songs between sessions
randomsound_0.2-5+b2_i386.deb ALSA sound card related entropy gathering daemon
randtype_1.13-11+b1_i386.deb semi-random text typer
ranger_1.9.2-4_all.deb Console File Manager with VI Key Bindings
rapid-photo-downloader_0.9.13-1_all.deb Photo downloader (importer) from cameras, memory cards, other devices
rapidjson-dev_1.1.0+dfsg2-5_all.deb fast JSON parser/generator for C++ with SAX/DOM style API
rapidjson-doc_1.1.0+dfsg2-5_all.deb fast JSON parser/generator for C++ (API documentation)
rapidsvn_0.12.1dfsg-3.1+b1_i386.deb GUI client for Subversion
rapmap-dev_0.12.0+dfsg-3_all.deb rapmap - rapid sensitive and accurate DNA read mapping (some headers)
rapmap-example-data_0.12.0+dfsg-3_all.deb example data for rapmap - rapid sensitive and accurate DNA read mapping
raptor2-utils_2.0.14-1+b1_i386.deb Raptor 2 RDF parser and serializer utilities
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