r-bioc-savr_1.20.0-1_all.deb


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Description

r-bioc-savr - GNU R parse and analyze Illumina SAV files

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package name r-bioc-savr
Package version 1.20.0
Package release 1
Package architecture all
Package type deb
Installed size 1.36 KB
Download size 592.36 KB
Official Mirror ftp.br.debian.org
This BioConductor module enables to parse Illumina Sequence Analysis
Viewer (SAV) files, access data, and generate QC plots.

Alternatives

Package Version Architecture Repository
r-bioc-savr_1.20.0-1_all.deb 1.20.0 all Debian Main
r-bioc-savr - - -

Requires

Name Value
r-api 3.5
r-base-core >= 3.5.1-1
r-cran ggplot2
r-cran gridextra
r-cran reshape2
r-cran xml
r-cran scales

Download

Type URL
Binary Package r-bioc-savr_1.20.0-1_all.deb
Source Package r-bioc-savr

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install r-bioc-savr deb package:
    # sudo apt-get install r-bioc-savr

Files

Path
/usr/lib/R/site-library/savR/DESCRIPTION
/usr/lib/R/site-library/savR/INDEX
/usr/lib/R/site-library/savR/NAMESPACE
/usr/lib/R/site-library/savR/Meta/Rd.rds
/usr/lib/R/site-library/savR/Meta/features.rds
/usr/lib/R/site-library/savR/Meta/hsearch.rds
/usr/lib/R/site-library/savR/Meta/links.rds
/usr/lib/R/site-library/savR/Meta/nsInfo.rds
/usr/lib/R/site-library/savR/Meta/package.rds
/usr/lib/R/site-library/savR/Meta/vignette.rds
/usr/lib/R/site-library/savR/R/savR
/usr/lib/R/site-library/savR/R/savR.rdb
/usr/lib/R/site-library/savR/R/savR.rdx
/usr/lib/R/site-library/savR/doc/index.html
/usr/lib/R/site-library/savR/doc/savR.R
/usr/lib/R/site-library/savR/doc/savR.Rnw
/usr/lib/R/site-library/savR/doc/savR.pdf
/usr/lib/R/site-library/savR/extdata/MiSeq/RunInfo.xml
/usr/lib/R/site-library/savR/extdata/MiSeq/InterOp/CorrectedIntMetricsOut.bin
/usr/lib/R/site-library/savR/extdata/MiSeq/InterOp/ExtractionMetricsOut.bin
/usr/lib/R/site-library/savR/extdata/MiSeq/InterOp/QMetricsOut.bin
/usr/lib/R/site-library/savR/extdata/MiSeq/InterOp/TileMetricsOut.bin
/usr/lib/R/site-library/savR/help/AnIndex
/usr/lib/R/site-library/savR/help/aliases.rds
/usr/lib/R/site-library/savR/help/paths.rds
/usr/lib/R/site-library/savR/help/savR.rdb
/usr/lib/R/site-library/savR/help/savR.rdx
/usr/lib/R/site-library/savR/html/00Index.html
/usr/lib/R/site-library/savR/html/R.css
/usr/share/doc/r-bioc-savr/README.test
/usr/share/doc/r-bioc-savr/changelog.Debian.gz
/usr/share/doc/r-bioc-savr/changelog.gz
/usr/share/doc/r-bioc-savr/copyright
/usr/share/doc/r-bioc-savr/run-unit-test
/usr/share/doc/r-bioc-savr/tests/testthat.R
/usr/share/doc/r-bioc-savr/tests/testthat/test_accessors.R
/usr/share/doc/r-bioc-savr/tests/testthat/test_load.R

Changelog

2018-11-15 - Dylan Aïssi <daissi@debian.org>
r-bioc-savr (1.20.0-1) unstable; urgency=medium
* Team upload.
* New upstream version.
* Add Testsuite: autopkgtest-pkg-r.
* Standards-Version: 4.2.1
* Remove trailing whitespace in debian/copyright
2018-06-04 - Andreas Tille <tille@debian.org>
r-bioc-savr (1.18.0-3) unstable; urgency=medium
* Rebuild for R 3.5 transition
2018-05-06 - Andreas Tille <tille@debian.org>
r-bioc-savr (1.18.0-2) unstable; urgency=medium
* Fix Maintainer and Vcs-fields
2018-05-04 - Andreas Tille <tille@debian.org>
r-bioc-savr (1.18.0-1) unstable; urgency=medium
* New upstream version
* debhelper 11
* Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-
lists.debian.net>
* Standards-Version: 4.1.4
2017-11-11 - Andreas Tille <tille@debian.org>
r-bioc-savr (1.16.0-1) unstable; urgency=medium
* New upstream version
* Secure URI in watch file
2017-10-02 - Andreas Tille <tille@debian.org>
r-bioc-savr (1.14.0-1) unstable; urgency=medium
* New upstream version
* Moved packaging from SVN to Git
* debhelper 10
* Standards-Version: 4.1.1
2016-11-07 - Andreas Tille <tille@debian.org>
r-bioc-savr (1.12.0-1) unstable; urgency=medium
* New upstream version
* Convert to dh-r
* Generic BioConductor homepage
2016-08-18 - Andreas Tille <tille@debian.org>
r-bioc-savr (1.10.0-1) unstable; urgency=low
* Initial release (closes: #834720)

See Also

Package Description
r-bioc-seqlogo_1.48.0-1_all.deb GNU R sequence logos for DNA sequence alignments
r-bioc-shortread_1.40.0-1_i386.deb GNU R classes and methods for high-throughput short-read sequencing data
r-bioc-snpstats_1.32.0+dfsg-1_i386.deb BioConductor SnpMatrix and XSnpMatrix classes and methods
r-bioc-summarizedexperiment_1.12.0+dfsg-1_all.deb BioConductor assay container
r-bioc-tfbstools_1.20.0+dfsg-1_i386.deb GNU R Transcription Factor Binding Site (TFBS) Analysis
r-bioc-variantannotation_1.28.10-1_i386.deb BioConductor annotation of genetic variants
r-bioc-xvector_0.22.0-1_i386.deb BioConductor representation and manpulation of external sequences
r-bioc-zlibbioc_1.28.0+dfsg-1_all.deb (Virtual) zlibbioc Bioconductor package
r-cran-abind_1.4-5-1.2_all.deb GNU R abind multi-dimensional array combination function
r-cran-acepack_1.4.1-2+b4_i386.deb GNU R package for regression transformations
r-cran-ade4_1.7-13-1_i386.deb GNU R analysis of ecological data
r-cran-adegenet_2.1.1-2_i386.deb GNU R exploratory analysis of genetic and genomic data
r-cran-adegraphics_1.0-15-1_all.deb GNU R lattice-based package for the representation of multivariate data
r-cran-adephylo_1.1-11-3_i386.deb GNU R exploratory analyses for the phylogenetic comparative method
r-cran-aer_1.2-6-1_all.deb Applied Econometrics with R
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