python3-ruffus_2.8.1-4_all.deb


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Description

python3-ruffus - Python3 computation pipeline library widely used in bioinformatics

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename python3-ruffus_2.8.1-4_all.deb
Package name python3-ruffus
Package version 2.8.1
Package release 4
Package architecture all
Package type deb
Category python
Homepage http://www.ruffus.org.uk/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 147.24 KB
Installed size 1.13 MB
Ruffus is designed to allow scientific and other analyses to be automated
with the minimum of fuss and the least effort.
* Lightweight: Suitable for the simplest of tasks
* Scalable: Handles even fiendishly complicated pipelines which would cause
make or scons to go cross-eyed and recursive.
* Standard Python: No "clever magic", no pre-processing.
* Unintrusive: Unambitious, lightweight syntax which tries to do this one
small thing well.
This package provides python3 modules.

Alternatives

Package Version Architecture Repository
python3-ruffus_2.8.1-4_all.deb 2.8.1 all Debian Main
python3-ruffus - - -

Requires

Name Value
graphviz -
python3:any -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package python3-ruffus_2.8.1-4_all.deb
Source Package python-ruffus

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python3-ruffus deb package:
    # sudo apt-get install python3-ruffus

Files

Path
/usr/lib/python3/dist-packages/ruffus/__init__.py
/usr/lib/python3/dist-packages/ruffus/adjacent_pairs_iterate.py
/usr/lib/python3/dist-packages/ruffus/cmdline.py
/usr/lib/python3/dist-packages/ruffus/combinatorics.py
/usr/lib/python3/dist-packages/ruffus/dbdict.py
/usr/lib/python3/dist-packages/ruffus/drmaa_wrapper.py
/usr/lib/python3/dist-packages/ruffus/file_name_parameters.py
/usr/lib/python3/dist-packages/ruffus/graph.py
/usr/lib/python3/dist-packages/ruffus/parse_old_style_ruffus.py
/usr/lib/python3/dist-packages/ruffus/print_dependencies.py
/usr/lib/python3/dist-packages/ruffus/proxy_logger.py
/usr/lib/python3/dist-packages/ruffus/ruffus_exceptions.py
/usr/lib/python3/dist-packages/ruffus/ruffus_utility.py
/usr/lib/python3/dist-packages/ruffus/ruffus_version.py
/usr/lib/python3/dist-packages/ruffus/task.py
/usr/lib/python3/dist-packages/ruffus-2.8.1.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/ruffus-2.8.1.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/ruffus-2.8.1.egg-info/top_level.txt
/usr/lib/python3/dist-packages/ruffus/test/check_subpipeline_cmdline.py
/usr/lib/python3/dist-packages/ruffus/test/complicated_example.py
/usr/lib/python3/dist-packages/ruffus/test/create_test_script_from_dependency_tree.py
/usr/lib/python3/dist-packages/ruffus/test/draw_specified_dependency_tree.py
/usr/lib/python3/dist-packages/ruffus/test/five_second.py
/usr/lib/python3/dist-packages/ruffus/test/manual_test_ctrl_c_exceptions.py
/usr/lib/python3/dist-packages/ruffus/test/manual_test_ctrl_c_exceptions_drmaa.py
/usr/lib/python3/dist-packages/ruffus/test/manual_test_drmaa.py
/usr/lib/python3/dist-packages/ruffus/test/play_with_colours.py
/usr/lib/python3/dist-packages/ruffus/test/qrsh_workaround.py
/usr/lib/python3/dist-packages/ruffus/test/run_all_unit_tests3.cmd
/usr/lib/python3/dist-packages/ruffus/test/simpler_with_shared_logging.py
/usr/lib/python3/dist-packages/ruffus/test/slow_process_for_testing.py
/usr/lib/python3/dist-packages/ruffus/test/test_N_x_M_and_collate.py
/usr/lib/python3/dist-packages/ruffus/test/test_active_if.py
/usr/lib/python3/dist-packages/ruffus/test/test_branching_dependencies.py
/usr/lib/python3/dist-packages/ruffus/test/test_check_if_uptodate.py
/usr/lib/python3/dist-packages/ruffus/test/test_cmdline.py
/usr/lib/python3/dist-packages/ruffus/test/test_collate.py
/usr/lib/python3/dist-packages/ruffus/test/test_combinatorics.py
/usr/lib/python3/dist-packages/ruffus/test/test_drmaa_wrapper_run_job_locally.py
/usr/lib/python3/dist-packages/ruffus/test/test_empty_files_decorator.py
/usr/lib/python3/dist-packages/ruffus/test/test_exceptions.py
/usr/lib/python3/dist-packages/ruffus/test/test_file_name_parameters.py
/usr/lib/python3/dist-packages/ruffus/test/test_files_decorator.py
/usr/lib/python3/dist-packages/ruffus/test/test_filesre_combine.py
/usr/lib/python3/dist-packages/ruffus/test/test_filesre_split_and_combine.py
/usr/lib/python3/dist-packages/ruffus/test/test_follows_mkdir.py
/usr/lib/python3/dist-packages/ruffus/test/test_graphviz.py
/usr/lib/python3/dist-packages/ruffus/test/test_inputs_with_multiple_args_raising_exception.py
/usr/lib/python3/dist-packages/ruffus/test/test_job_completion_checksums.py
/usr/lib/python3/dist-packages/ruffus/test/test_job_history_with_exceptions.py
/usr/lib/python3/dist-packages/ruffus/test/test_mkdir.py
/usr/lib/python3/dist-packages/ruffus/test/test_newstyle_combinatorics.py
/usr/lib/python3/dist-packages/ruffus/test/test_newstyle_proxy.py
/usr/lib/python3/dist-packages/ruffus/test/test_newstyle_regex_error_messages.py
/usr/lib/python3/dist-packages/ruffus/test/test_pausing.py
/usr/lib/python3/dist-packages/ruffus/test/test_pipeline_printout_graph.py
/usr/lib/python3/dist-packages/ruffus/test/test_pool_manager.py
/usr/lib/python3/dist-packages/ruffus/test/test_posttask_merge.py
/usr/lib/python3/dist-packages/ruffus/test/test_proxy_logger.py
/usr/lib/python3/dist-packages/ruffus/test/test_regex_error_messages.py
/usr/lib/python3/dist-packages/ruffus/test/test_ruffus_utility.py
/usr/lib/python3/dist-packages/ruffus/test/test_ruffus_utility_parse_task_arguments.py
/usr/lib/python3/dist-packages/ruffus/test/test_runtime_data.py
/usr/lib/python3/dist-packages/ruffus/test/test_softlink_uptodate.py
/usr/lib/python3/dist-packages/ruffus/test/test_split_and_combine.py
/usr/lib/python3/dist-packages/ruffus/test/test_split_regex_and_collate.py
/usr/lib/python3/dist-packages/ruffus/test/test_split_subdivide_checkpointing.py
/usr/lib/python3/dist-packages/ruffus/test/test_subpipeline.py
/usr/lib/python3/dist-packages/ruffus/test/test_suffix_output_dir.py
/usr/lib/python3/dist-packages/ruffus/test/test_task_file_dependencies.py
/usr/lib/python3/dist-packages/ruffus/test/test_task_misc.py
/usr/lib/python3/dist-packages/ruffus/test/test_transform_add_inputs.py
/usr/lib/python3/dist-packages/ruffus/test/test_transform_formatter.py
/usr/lib/python3/dist-packages/ruffus/test/test_transform_inputs.py
/usr/lib/python3/dist-packages/ruffus/test/test_transform_with_no_re_matches.py
/usr/lib/python3/dist-packages/ruffus/test/test_tutorial7.py
/usr/lib/python3/dist-packages/ruffus/test/test_unicode_filenames.py
/usr/lib/python3/dist-packages/ruffus/test/test_verbosity.py
/usr/lib/python3/dist-packages/ruffus/test/test_with_logger.py
/usr/share/doc/python3-ruffus/changelog.Debian.gz
/usr/share/doc/python3-ruffus/changelog.gz
/usr/share/doc/python3-ruffus/copyright

Changelog

2018-12-14 - Andreas Tille <tille@debian.org>
python-ruffus (2.8.1-4) unstable; urgency=medium
* Enable reproducible build by removing non-deterministic temporary temp
output (Thanks for the patch to Chris Lamb <lamby@debian.org>)
Closes: #916425
2018-12-03 - Gianfranco Costamagna <locutusofborg@debian.org>
python-ruffus (2.8.1-3) unstable; urgency=medium
[ Gianfranco Costamagna ]
* Team upload
[ Dimitri John Ledkov <xnox@ubuntu.com> ]
* And add python-pytest to debian/tests/control.autodep8 too, to fix
testsuite
2018-12-03 - Andreas Tille <tille@debian.org>
python-ruffus (2.8.1-2) unstable; urgency=medium
* Try hard to find Makefile to run test suite for Python2
Closes: #915382
2018-12-02 - Andreas Tille <tille@debian.org>
python-ruffus (2.8.1-1) unstable; urgency=medium
[ Jelmer Vernooń≥ ]
* Use secure copyright file specification URI.
[ Andreas Tille ]
* New upstream version
Closes: 915250
* Standards-Version: 4.2.1
* Build-Depends: python-pytest
* d/rules: Test script needs bash options
* Fix autopkgtest (enforce bash, set HOME variable)
2018-07-11 - Andreas Tille <tille@debian.org>
python-ruffus (2.7-1) unstable; urgency=medium
* New upstream version
Closes: #903531
* Standards-Version: 4.1.5
* Build-Depends: python3-sphinx-rtd-theme
* d/rules: strip unneeded overrides
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test
* Fix interpreter line in test suite
* Avoid privacy breach
2018-04-16 - Andreas Tille <tille@debian.org>
python-ruffus (2.6.3+dfsg-5) unstable; urgency=medium
* Testsuite: autopkgtest-pkg-python
* Rename d/tests/control to d/tests/control.autodep8
* Standards-Version: 4.1.4
* Point Vcs fields to salsa.debian.org
* debhelper 11
* d/rules:
- Remove get-orig-source target
- Do not parse d/changelog
* Build-Depends: s/python-sphinx/python3-sphinx/
2016-07-26 - Andreas Tille <tille@debian.org>
python-ruffus (2.6.3+dfsg-4) unstable; urgency=medium
* Point watch file to Github which is more reliable.
* Drop sphinx.ext.pngmath
Closes: #832299
* Create PNG instead of JPG to work around bug #827806
(Thanks to Christian Seiler for the hint)
2016-06-09 - Sascha Steinbiss <sascha@steinbiss.name>
python-ruffus (2.6.3+dfsg-3) unstable; urgency=medium
[ Sascha Steinbiss ]
* Team upload.
* Add missing dependency on Graphviz (fixes FTFBS on reproducible
builds pipeline due to failing build time tests)
Closes: #826841
[ Andreas Tille ]
* cme fix dpkg-control
2016-01-15 - Andreas Tille <tille@debian.org>
python-ruffus (2.6.3+dfsg-2) unstable; urgency=medium
* Fix issue in test when using Python 3.5 (Thanks for the hints to
Dmitry Shachnev <mitya57@debian.org>)
Closes: #811002
* Use Debian packaged mathjax (Thanks to Dmitry Shachnev <mitya57@debian.org>
for the hint)
2015-07-17 - Andreas Tille <tille@debian.org>
python-ruffus (2.6.3+dfsg-1) unstable; urgency=medium
* New upstream version

See Also

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python3-sasmodels_0.99-2_all.deb Theoretical models for small angle scattering (Python 3)
python3-savitar_3.3.0-3_i386.deb 3MF file handling library (Python bindings)
python3-sbml5-doc_5.17.2+dfsg-3_all.deb System Biology Markup Language library - Python3 documentation
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python3-scales_1.0.9-2_all.deb Application metrics for Python 3
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