python3-edlib_1.2.4-1_i386.deb


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Description

python3-edlib - library for sequence alignment using edit distance (Python3 module)

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename python3-edlib_1.2.4-1_i386.deb
Package name python3-edlib
Package version 1.2.4
Package release 1
Package architecture i386
Package type deb
Category python
Homepage https://github.com/Martinsos/edlib
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 32.30 KB
Installed size 94.00 KB
A lightweight and super fast C/C++ library for sequence alignment using
edit distance.
Calculating edit distance of two strings is as simple as:
edlibAlign("hello", 5, "world!", 6,
edlibDefaultAlignConfig()).editDistance;
Features
* Calculates edit distance (Levehnstein distance).
* It can find optimal alignment path (instructions how to transform
first sequence into the second sequence).
* It can find just the start and/or end locations of alignment path -
can be useful when speed is more important than having exact
alignment path.
* Supports multiple alignment methods: global(NW), prefix(SHW) and
infix(HW), each of them useful for different scenarios.
* You can extend character equality definition, enabling you to e.g.
have wildcard characters, to have case insensitive alignment or to
work with degenerate nucleotides.
* It can easily handle small or very large sequences, even when finding
alignment path, while consuming very little memory.
* Super fast thanks to Myers's bit-vector algorithm.
This package contains the Python3 module.

Alternatives

Package Version Architecture Repository
python3-edlib_1.2.4-1_amd64.deb 1.2.4 amd64 Debian Main
python3-edlib - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:3.0
libstdc++6 >= 5.2
python3 >= 3.7~
python3 << 3.8

Download

Type URL
Mirror ftp.br.debian.org
Binary Package python3-edlib_1.2.4-1_i386.deb
Source Package libedlib

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python3-edlib deb package:
    # sudo apt-get install python3-edlib

Files

Path
/usr/lib/python3/dist-packages/edlib.cpython-37m-i386-linux-gnu.so
/usr/lib/python3/dist-packages/edlib-1.2.3.post1.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/edlib-1.2.3.post1.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/edlib-1.2.3.post1.egg-info/top_level.txt
/usr/share/doc/python3-edlib/changelog.Debian.gz
/usr/share/doc/python3-edlib/copyright

Changelog

2019-01-28 - Andreas Tille <tille@debian.org>
libedlib (1.2.4-1) unstable; urgency=medium
* New upstream version
* debhelper 12
* Standards-Version: 4.3.0
2018-12-19 - Andreas Tille <tille@debian.org>
libedlib (1.2.3-5) unstable; urgency=medium
* Declare characters signed explicitly
Closes: #911967
2018-12-17 - Andreas Tille <tille@debian.org>
libedlib (1.2.3-4) unstable; urgency=medium
* Make sure the executable is found in test
* Add Python3 bindings
2018-10-19 - Andreas Tille <tille@debian.org>
libedlib (1.2.3-3) unstable; urgency=medium
* Fix Vcs fields
2018-10-19 - Andreas Tille <tille@debian.org>
libedlib (1.2.3-2) unstable; urgency=medium
* Fix symbols file
Closes: #905386
* Standards-Version: 4.2.1
* Run build time tests
* Add autopkgtest
2018-06-10 - Andreas Tille <tille@debian.org>
libedlib (1.2.3-1) unstable; urgency=medium
* Initial release (Closes: #901184)

See Also

Package Description
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python3-elasticsearch-curator_5.2.0-1_all.deb Python 3 library for managing Elasticsearch time-series indices
python3-elasticsearch_5.4.0-1_all.deb Python client for Elasticsearch (Python3 version)
python3-emcee_2.2.1-1_all.deb Affine-invariant ensemble MCMC sampling for Python 3
python3-empy_3.3.2-2_all.deb templating system for Python (Python 3)
python3-enchant_2.0.0-1_all.deb spellchecking library for Python 3
python3-enet_0.0~vcs.2017.05.26.git-2.1+b1_i386.deb Python3 wrapper for the ENet library
python3-engineio_3.0.0+dfsg-1_all.deb python3 implementation of the Engine.IO realtime server
python3-enigma_0.1-3_all.deb historically accurate Enigma Machine library
python3-entrypoints_0.3-1_all.deb Discover and load entry points from installed packages (Python 3)
python3-envparse_0.2.0-1_all.deb environment variable parsing (Python 3)
python3-envs_1.2.6-1_all.deb Easy access to environment variables in Python
python3-enzyme_0.4.1-1.1_all.deb video metadata parser (Python 3)
python3-epc_0.0.5-2_all.deb RPC stack for Emacs Lisp (Python3 version)
python3-ephem_3.7.6.0-7+b1_i386.deb Compute positions of the planets and stars with Python 3
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