pdb2pqr-doc_2.1.1+dfsg-5_all.deb


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Description

pdb2pqr-doc - example files accompanying pdb2pqr

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename pdb2pqr-doc_2.1.1+dfsg-5_all.deb
Package name pdb2pqr-doc
Package version 2.1.1+dfsg
Package release 5
Package architecture all
Package type deb
Category doc role::documentation
Homepage https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/apbs/pdb2pqr.html
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 464.57 KB
Installed size 1.70 MB
Files containing protein structures tend to become large very quickly and
most users of this package will refrain from their installation, particularly
on larger clusters.

Alternatives

Package Version Architecture Repository
pdb2pqr-doc_2.1.1+dfsg-5_all.deb 2.1.1+dfsg all Debian Main
pdb2pqr-doc - - -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package pdb2pqr-doc_2.1.1+dfsg-5_all.deb
Source Package pdb2pqr

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install pdb2pqr-doc deb package:
    # sudo apt-get install pdb2pqr-doc

Files

Path
/usr/share/doc-base/pdb2pqr
/usr/share/doc/pdb2pqr/programmerguide.html
/usr/share/doc/pdb2pqr/userguide.html
/usr/share/doc/pdb2pqr-doc/changelog.Debian.gz
/usr/share/doc/pdb2pqr-doc/changelog.gz
/usr/share/doc/pdb2pqr-doc/copyright
/usr/share/doc/pdb2pqr/examples/build_config.py
/usr/share/doc/pdb2pqr/examples/index.html
/usr/share/doc/pdb2pqr/examples/pdb2pqr_web_interface_tutorial-01.png
/usr/share/doc/pdb2pqr/examples/pdb2pqr_web_interface_tutorial-02.png
/usr/share/doc/pdb2pqr/examples/pdb2pqr_web_interface_tutorial-03.png
/usr/share/doc/pdb2pqr/examples/pdb2pqr_web_interface_tutorial-04.png
/usr/share/doc/pdb2pqr/examples/pdb2pqr_web_interface_tutorial-05.png
/usr/share/doc/pdb2pqr/examples/1a1p/1a1p.pdb.gz
/usr/share/doc/pdb2pqr/examples/1a1p/README
/usr/share/doc/pdb2pqr/examples/graphcut/run-graphcut.sh
/usr/share/doc/pdb2pqr/examples/ligands/LIG_1ABF.mol2
/usr/share/doc/pdb2pqr/examples/ligands/LIG_1HPV.mol2.gz
/usr/share/doc/pdb2pqr/examples/ligands/LIG_1HPX.mol2.gz
/usr/share/doc/pdb2pqr/examples/ligands/LIG_1QBS.mol2.gz
/usr/share/doc/pdb2pqr/examples/ligands/LIG_1XL5.mol2.gz
/usr/share/doc/pdb2pqr/examples/ligands/README
/usr/share/doc/pdb2pqr/images/flowchart.png
/usr/share/doc/pdb2pqr/pydoc/.htaccess
/usr/share/doc/pdb2pqr/pydoc/copy.html
/usr/share/doc/pdb2pqr/pydoc/getopt.html
/usr/share/doc/pdb2pqr/pydoc/index.html
/usr/share/doc/pdb2pqr/pydoc/math.html
/usr/share/doc/pdb2pqr/pydoc/os.html
/usr/share/doc/pdb2pqr/pydoc/pdb2pqr.html
/usr/share/doc/pdb2pqr/pydoc/re.html
/usr/share/doc/pdb2pqr/pydoc/src.aa.html
/usr/share/doc/pdb2pqr/pydoc/src.definitions.html
/usr/share/doc/pdb2pqr/pydoc/src.forcefield.html
/usr/share/doc/pdb2pqr/pydoc/src.html
/usr/share/doc/pdb2pqr/pydoc/src.hydrogens.html
/usr/share/doc/pdb2pqr/pydoc/src.inputgen.html
/usr/share/doc/pdb2pqr/pydoc/src.na.html
/usr/share/doc/pdb2pqr/pydoc/src.pdb.html
/usr/share/doc/pdb2pqr/pydoc/src.protein.html
/usr/share/doc/pdb2pqr/pydoc/src.psize.html
/usr/share/doc/pdb2pqr/pydoc/src.quatfit.html
/usr/share/doc/pdb2pqr/pydoc/src.routines.html
/usr/share/doc/pdb2pqr/pydoc/src.server.html
/usr/share/doc/pdb2pqr/pydoc/src.structures.html
/usr/share/doc/pdb2pqr/pydoc/src.topology.html
/usr/share/doc/pdb2pqr/pydoc/src.utilities.html
/usr/share/doc/pdb2pqr/pydoc/string.html
/usr/share/doc/pdb2pqr/pydoc/sys.html
/usr/share/doc/pdb2pqr/pydoc/time.html
/usr/share/doc/pdb2pqr/pydoc/xml.sax.html

Changelog

2019-05-27 - Andrius Merkys <merkys@debian.org>
pdb2pqr (2.1.1+dfsg-5) unstable; urgency=medium
* Team upload.
[ Andreas Tille ]
* Build-Depends: dh-python
[ Andrius Merkys ]
* Fixing autopkgtest 'installation-test' by substituting non-existent PDB
file with an existing one. Removing autopkgtest 'ligands-test' as it
depended on files that are not shipped by the upstream anymore.
(Closes: #903759)
2018-07-14 - Andreas Tille <tille@debian.org>
pdb2pqr (2.1.1+dfsg-4) unstable; urgency=medium
* Adapt test to new location of examples
Closes: #903759
2018-07-13 - Andreas Tille <tille@debian.org>
pdb2pqr (2.1.1+dfsg-3) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to registries
- yamllint cleanliness
[ Tatiana Malygina ]
* Enhance README.test and README.Debian
[ Andreas Tille ]
* Remove ancient X-Python-Version field
* Fix Homepage
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* d/rules: do not parse d/changelog
2016-06-13 - Tatiana Malygina <merlettaia@gmail.com>
pdb2pqr (2.1.1+dfsg-2) unstable; urgency=medium
[ Tatiana Malygina ]
* Team upload.
* add README.test, docs, examples and simple testsuite
* enable hardening
* add patch to remove hardening-no-relro warning
* improved tests: add separate tests for use with pdb2pqr-doc installed and
without it
* found parameter set when error raised (described in `pdb2pka-test` 
in testsuite), updated d/docs
* fixed `pdb2pqr-test` - now should work ok (haven't checked with apbs yet)
* add patch to remove debug-file-with-no-debug-symbols warning (turn on debug)
* add networkx to d/control and test dependencies, mention in README.test
* fix order of commands in debian/rules - override_dh_auto_configure:
scons is now called after several files are regenerated with swig.
* updated README.test + README.Debian
[ Andreas Tille ]
* Drop unused lintian overrides
2016-05-07 - Andreas Tille <tille@debian.org>
pdb2pqr (2.1.1+dfsg-1) unstable; urgency=medium
* New upstream version
* Add new options to d/watch
* cme fix dpkg-control
* drop wrapper and use links instead
* fix interpreter lines by dos2unix
2016-01-08 - Andreas Tille <tille@debian.org>
pdb2pqr (2.1.0+dfsg-1) unstable; urgency=medium
* Moved to Git
* New upstream version
* Add lintian overrides for false positives source-is-missing
* Remove unused JS files via Files-Excluded
2015-11-26 - Andreas Tille <tille@debian.org>
pdb2pqr (2.0.0+dfsg-2) unstable; urgency=medium
* Enable building arch independent packages separately
Closes: #806222
* Remove obsolete debian/pycompat
2015-05-18 - Andreas Tille <tille@debian.org>
pdb2pqr (2.0.0+dfsg-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
* Fix bashism
Closes: #772350
* Make the build reproducible by preseting URL and PREFIX (thanks for the
patch to Reiner Herrmann <reiner@reiner-h.de>)
Closes: #785546
2014-04-19 - Andreas Tille <tille@debian.org>
pdb2pqr (1.9.0+dfsg-1) unstable; urgency=medium
* New upstream version
* Adapted watch file
* Move debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* debian/patches/no_privacy_breach_logo.patch: remove potential
privacy breach logo
* drop autotools from Build-Depends since build system was changed
2013-10-24 - Andreas Tille <tille@debian.org>
pdb2pqr (1.8+dfsg-1) unstable; urgency=low
[ Manuel Prinz ]
* Fixed build issues on HURD. Thanks to Barry deFreese for the patch!
Closes: 674976.
* Pass hardening flags to linker. Added fix-hardening.patch, changed
debian/rules.
[ Andreas Tille ]
* Use '+dfsg' appendix to mark repackaged upstream source (adapted
debian/watch)
* debian/rules:
- repackaging is done using enhanced uscan
- s/autotools-dev/autotools_dev/
Closes: #727491
* debian/control:
- cme fix dpkg-control
- canonical Vcs fields
* debian/copyright: DEP5

See Also

Package Description
pdb2pqr_2.1.1+dfsg-5_i386.deb Preparation of protein structures for electrostatics calculations
pdd_1.3.1-1_all.deb Tiny date, time diff calculator
pdepend_2.5.2-1_all.deb design quality metrics for PHP packages
pdf-presenter-console_4.3.2-1_i386.deb multi-monitor presentation tool (ala Keynote) for PDF files
pdf-redact-tools_0.1.2-1_all.deb PDF Redact Tools helps with securely redacting and stripping
pdf2djvu_0.9.12-1+b1_i386.deb PDF to DjVu converter
pdf2svg_0.2.3-1_i386.deb converts PDF documents to SVG files (one per page)
pdfarranger_1.1.1-1_all.deb merge, split and re-arrange pages from PDF documents
pdfchain_0.4.4.2-1_i386.deb graphical user interface for the PDF Tool Kit
pdfcrack_0.16-3_i386.deb PDF files password cracker
pdfcube_0.0.5-2+b5_i386.deb PDF document viewer with 3D effects
pdfgrep_2.1.2-1_i386.deb search in pdf files for strings matching a regular expression
pdfminer-data_20181108+dfsg-3_all.deb PDF parser and analyser (encoding data)
pdfmod_0.9.1-8.1_all.deb simple tool for modifying PDF documents
pdfposter_0.7.post1-1_all.deb scale and tile PDF images/pages to print on multiple pages
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