openms-common_2.4.0-real-1_all.deb


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Description

openms-common - package for LC/MS data management and analysis - shared data

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename openms-common_2.4.0-real-1_all.deb
Package name openms-common
Package version 2.4.0
Package release real-1
Package architecture all
Package type deb
Category science
Homepage http://www.openms.de
License -
Maintainer The Debichem Group <debichem-devel@lists.alioth.debian.org>
Download size 38.17 MB
Installed size 144.28 MB
OpenMS is a package for LC/MS data management and analysis. OpenMS
offers an infrastructure for the development of mass
spectrometry-related software and powerful 2D and 3D visualization
solutions.
OpenMS offers analyses for various quantitation protocols, including
label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
It provides built-in algorithms for de-novo identification and
database search, as well as adapters to other state-of-the art tools
like X!Tandem, Mascot, OMSSA…
OpenMS supports the Proteomics Standard Initiative (PSI) formats for
MS data and supports easy integration of tools into workflow engines
like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
and a unified parameter handling.
This package brings data shared by the different binaries of the
OpenMS software package (libOpenMS and libOpenMS_GUI libraries and
the OpenMS Proteomic Pipeline binary tools).

Alternatives

Package Version Architecture Repository
openms-common_2.4.0-real-1_all.deb 2.4.0 all Debian Main
openms-common - - -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package openms-common_2.4.0-real-1_all.deb
Source Package openms

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install openms-common deb package:
    # sudo apt-get install openms-common

Files

Path
/usr/share/doc/openms-common/AUTHORS
/usr/share/doc/openms-common/changelog.Debian.gz
/usr/share/doc/openms-common/changelog.gz
/usr/share/doc/openms-common/copyright
/usr/share/man/man7/openms-common.7.gz
/usr/share/openms-common/CHEMISTRY/Elements.xml
/usr/share/openms-common/CHEMISTRY/Enzymes.xml
/usr/share/openms-common/CHEMISTRY/Enzymes_RNA.xml
/usr/share/openms-common/CHEMISTRY/HMDB2StructMapping.tsv
/usr/share/openms-common/CHEMISTRY/HMDBMappingFile.tsv
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModel.scale
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModel.svm
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModelNoised2.scale
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModelNoised2.svm
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModelNoised5.scale
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModelNoised5.svm
/usr/share/openms-common/CHEMISTRY/MissedCleavage.model
/usr/share/openms-common/CHEMISTRY/NegativeAdducts.tsv
/usr/share/openms-common/CHEMISTRY/OMSSA_modification_mapping
/usr/share/openms-common/CHEMISTRY/PSI-MOD.obo
/usr/share/openms-common/CHEMISTRY/PositiveAdducts.tsv
/usr/share/openms-common/CHEMISTRY/Residues.xml
/usr/share/openms-common/CHEMISTRY/XLMOD.obo
/usr/share/openms-common/CHEMISTRY/XTandem_default_input.xml
/usr/share/openms-common/CHEMISTRY/unimod.xml
/usr/share/openms-common/CV/brenda.obo
/usr/share/openms-common/CV/goslim_goa.obo
/usr/share/openms-common/CV/psi-ms.obo
/usr/share/openms-common/CV/psi-mzdata.obo
/usr/share/openms-common/CV/qc-cv.obo
/usr/share/openms-common/CV/quality.obo
/usr/share/openms-common/CV/unimod.obo
/usr/share/openms-common/CV/unit.obo
/usr/share/openms-common/DESKTOP/TOPPAS.appdata.xml
/usr/share/openms-common/DESKTOP/TOPPAS.desktop
/usr/share/openms-common/DESKTOP/TOPPView.appdata.xml
/usr/share/openms-common/DESKTOP/TOPPView.desktop
/usr/share/openms-common/DESKTOP/readme.txt
/usr/share/openms-common/GUISTYLE/qtStyleSheet.qss
/usr/share/openms-common/IDPool/IDPool.txt
/usr/share/openms-common/IDPool/README
/usr/share/openms-common/MAPPING/TraML-mapping.xml
/usr/share/openms-common/MAPPING/ms-mapping.xml
/usr/share/openms-common/MAPPING/mzIdentML-mapping.xml
/usr/share/openms-common/MAPPING/mzdata-mapping.xml
/usr/share/openms-common/PIP/codebooks.data
/usr/share/openms-common/PIP/linearMapping.data
/usr/share/openms-common/SCHEMAS/CTD_0_3.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_0.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_1.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_2.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_3.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_4.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_5.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_6.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_7.xsd
/usr/share/openms-common/SCHEMAS/CvMapping.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_0.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_1.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_2.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_3.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_4.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_5.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_6.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_7.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_8.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_9.xsd
/usr/share/openms-common/SCHEMAS/FuGElightv1.0.0.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_0.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_1.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_2.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_3.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_4.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_5.xsd
/usr/share/openms-common/SCHEMAS/Param_1_0.xsd
/usr/share/openms-common/SCHEMAS/Param_1_1.xsd
/usr/share/openms-common/SCHEMAS/Param_1_2.xsd
/usr/share/openms-common/SCHEMAS/Param_1_3.xsd
/usr/share/openms-common/SCHEMAS/Param_1_4.xsd
/usr/share/openms-common/SCHEMAS/Param_1_6_2.xsd
/usr/share/openms-common/SCHEMAS/ToolDescriptor_1_0.xsd
/usr/share/openms-common/SCHEMAS/TraML0.9.3.xsd
/usr/share/openms-common/SCHEMAS/TraML1.0.0.xsd
/usr/share/openms-common/SCHEMAS/TrafoXML_1_0.xsd
/usr/share/openms-common/SCHEMAS/TrafoXML_1_1.xsd
/usr/share/openms-common/SCHEMAS/general_types_1.0.xsd
/usr/share/openms-common/SCHEMAS/mzData_1_05.xsd
/usr/share/openms-common/SCHEMAS/mzIdentML1.0.0.xsd
/usr/share/openms-common/SCHEMAS/mzIdentML1.1.0.xsd
/usr/share/openms-common/SCHEMAS/mzML_1_00.xsd
/usr/share/openms-common/SCHEMAS/mzML_1_10.xsd
/usr/share/openms-common/SCHEMAS/mzML_idx_1_00.xsd
/usr/share/openms-common/SCHEMAS/mzML_idx_1_10.xsd
/usr/share/openms-common/SCHEMAS/mzQCML_0_0_5.xsd
/usr/share/openms-common/SCHEMAS/mzQuantML_1_0_0-rc2.xsd
/usr/share/openms-common/SCHEMAS/mzXML_2_1.xsd
/usr/share/openms-common/SCHEMAS/mzXML_3.1.xsd
/usr/share/openms-common/SCHEMAS/mzXML_3.1_mod.xsd
/usr/share/openms-common/SCHEMAS/mzXML_idx_3.1.xsd
/usr/share/openms-common/SCHEMAS/pepXML_v114.xsd
/usr/share/openms-common/SCHEMAS/protXML_v6.xsd
/usr/share/openms-common/SCHEMAS/qcML_0.0.7.xsd
/usr/share/openms-common/SCHEMAS/separation_technique_1.0.xsd
/usr/share/openms-common/SCHEMAS/xQuest_1_0.xsd
/usr/share/openms-common/SCRIPTS/InternalCalibration_Models.R
/usr/share/openms-common/SCRIPTS/InternalCalibration_Residuals.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_acc.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_idmap.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_inj.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_rt_acc.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_setid.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_tic.R
/usr/share/openms-common/SCRIPTS/Rscript_generic_example.R
/usr/share/openms-common/SCRIPTS/mzTab2tsv_PEP.R
/usr/share/openms-common/SCRIPTS/mzTab2tsv_PRT.R
/usr/share/openms-common/SCRIPTS/mzTab2tsv_PSM.R
/usr/share/openms-common/SCRIPTS/plot_trafo.R
/usr/share/openms-common/THIRDPARTY/ReadMe.txt
/usr/share/openms-common/TOOLS/EXTERNAL/Hardkloer.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/MSGFtoPercolator.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/MascotPercolator.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Percolator.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/QCExporter.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/RawDirConvert.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/ReadMe.txt
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_generic.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_mzTab2tsv_PEP.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_mzTab2tsv_PRT.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_mzTab2tsv_PSM.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_acc.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_idmap.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_rt_acc.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_setid.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_tic.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_trapfill.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/TEMPLATE.ttd_
/usr/share/openms-common/TOOLS/EXTERNAL/TPP_RefreshParser.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/XTandemToPercolator.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/msconvert.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/LINUX/TPP_ProteinProphet.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/LINUX/mail.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/WINDOWS/TPP_ProteinProphet.ttd
/usr/share/openms-common/XSL/APML_to_CSV.xsl
/usr/share/openms-common/XSL/ConsensusXML.xsl
/usr/share/openms-common/XSL/IdXML.xsl
/usr/share/openms-common/XSL/QcML_report_sheet.xsl
/usr/share/openms-common/XSL/index.html
/usr/share/openms-common/cmake/OpenMSConfig.cmake
/usr/share/openms-common/cmake/OpenMSConfigVersion.cmake
/usr/share/openms-common/cmake/OpenMSTargets-release.cmake
/usr/share/openms-common/cmake/OpenMSTargets.cmake
/usr/share/openms-common/examples/LCMS-centroided.featureXML
/usr/share/openms-common/examples/LCMS-centroided.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_1.ini
/usr/share/openms-common/examples/peakpicker_tutorial_1.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_1_baseline_and_noise_filtered.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_1_baseline_filtered.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_1_picked.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_2.ini
/usr/share/openms-common/examples/peakpicker_tutorial_2.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_2_picked.mzML
/usr/share/openms-common/examples/BSA/BSA1.mzML
/usr/share/openms-common/examples/BSA/BSA1_OMSSA.idXML
/usr/share/openms-common/examples/BSA/BSA2.mzML
/usr/share/openms-common/examples/BSA/BSA2_OMSSA.idXML
/usr/share/openms-common/examples/BSA/BSA3.mzML
/usr/share/openms-common/examples/BSA/BSA3_OMSSA.idXML
/usr/share/openms-common/examples/CHROMATOGRAMS/Spyogenes.chrom.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F1.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F1.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F1.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F1_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F1_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F2.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F2.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F2.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F2_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F2_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F1.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F1.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F1.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F1_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F1_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F2.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F2.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F2.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F2_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F2_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F1.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F1.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F1.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F1_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F1_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F2.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F2.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F2.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F2_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F2_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA_design.tsv
/usr/share/openms-common/examples/FRACTIONS/BSA_linked.consensusXML
/usr/share/openms-common/examples/ID/Ecoli_MS2_small.mzML
/usr/share/openms-common/examples/QCImporter/additional_tabular_data.csv
/usr/share/openms-common/examples/QCImporter/additional_tabular_mapping.csv
/usr/share/openms-common/examples/TOPPAS/BSA_Quantitation.toppas
/usr/share/openms-common/examples/TOPPAS/Ecoli_Identification.toppas
/usr/share/openms-common/examples/TOPPAS/GenericWrapper_Rscript-generic.toppas
/usr/share/openms-common/examples/TOPPAS/merger_tutorial.toppas
/usr/share/openms-common/examples/TOPPAS/peakpicker_tutorial.toppas
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta.phr
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta.pin
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta.psd
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta.psi
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta.psq
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.phr
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.pin
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.pog
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.psd
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.psi
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.psq
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_1.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_10.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_11.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_12.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_2.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_3.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_4.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_5.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_6.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_7.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_8.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_9.mzML
/usr/share/openms-common/examples/external_code/CMakeLists.txt
/usr/share/openms-common/examples/external_code/ExampleLibraryFile.cpp
/usr/share/openms-common/examples/external_code/ExampleLibraryFile.h
/usr/share/openms-common/examples/external_code/Main.cpp
/usr/share/openms-common/examples/external_code/README.md
/usr/share/openms-common/examples/simulation/DTPredict.model
/usr/share/openms-common/examples/simulation/DTPredict.model_additional_parameters
/usr/share/openms-common/examples/simulation/DTPredict.model_samples
/usr/share/openms-common/examples/simulation/FASTAProteinAbundanceSampling.py
/usr/share/openms-common/examples/simulation/MSMSim.model
/usr/share/openms-common/examples/simulation/README
/usr/share/openms-common/examples/simulation/RTPredict.model
/usr/share/openms-common/examples/simulation/RTPredict.model_additional_parameters
/usr/share/openms-common/examples/simulation/RTPredict.model_samples
/usr/share/openms-common/examples/simulation/SvmMSim.model
/usr/share/openms-common/examples/simulation/SvmModelSet.model
/usr/share/openms-common/examples/simulation/contaminants.csv
/usr/share/openms-common/examples/simulation/model_11__1_class.svm
/usr/share/openms-common/examples/simulation/model_11__1_reg.svm
/usr/share/openms-common/examples/simulation/testModel_11__1_class.svm
/usr/share/openms-common/examples/simulation/testModel_11__1_reg.svm

Changelog

2018-11-17 - Filippo Rusconi <lopippo@debian.org>
openms (2.4.0-real-1) unstable; urgency=low
* Really released 2.4.0 version with Qt5 port merged;
* d/control: update website url to http://www.openms.de (thanks to Adrian Bunk
<bunk@debian.org>; Closes: #906561);
* d/copyright: update website url and copyright years.
add Design Science License (Thanks to Dmitry Smirnov
<onlyjob@debian.org>, Closes: #822412);
* d/control: fix libqt5opengl5-dev (>= 5.7.0) to libqt5opengl5-desktop-dev
(>= 5.7.0) because upstream won't support OpenGL ES anytime soon (thanks
to Adrian Bunk <bunk@debian.org>, Closes: #906666);
* Use secure copyright file specification URI.
* Trim trailing whitespace.
Jelmer Vernooij <jelmer@debian.org>  Mon, 15 Oct 2018 06:59:37 +0000
* debian/control: Change "Conflicts:" to "Breaks:" (Closes:
#816562);
2018-08-16 - Filippo Rusconi <lopippo@debian.org>
openms (2.4.0-1) unstable; urgency=low
* New upstream version (release branch with Qt5 port merged).
2018-04-19 - Filippo Rusconi <lopippo@debian.org>
openms (2.3-20180419-git-a0b7f650-1) experimental; urgency=low
* New upstream version (development branch with Qt5 port merged).
2017-09-06 - Filippo Rusconi <lopippo@debian.org>
openms (20170907-1) UNRELEASED; urgency=medium
* New upstream version ported to Qt5.
2016-03-30 - Filippo Rusconi <lopippo@debian.org>
openms (2.0.0-4) unstable; urgency=medium
* debian/control: Change "Conflicts:" to "Breaks:" (Closes:
#816562);
* debian/rules: fix the OPENMS_DATA_PATH value so that it points to
/us/share/openms-common and not /usr/share/openms-common/OpenMS.
* debian/rules: Put dh_clean at the end of the clean target.
* switched doc_minimal doc_class_only targets around in the make call
because the doxygen-based documentation for the classes did not get
generated fully.
* Remove the git protocol URL for the repos and switch to secure http for
the other URL.
* debian/control: Standards-Version: 3.9.7. No changes required.
* debian/rules: Reinstate DEB_BUILD_MAINT_OPTIONS along with the hardening
flag +all..
* debian/rules: Make sure libSuperHirn and libOpenMS_GUI libraries are
processed fine with respect to the symbols control file.
2016-01-18 - Filippo Rusconi <lopippo@debian.org>
openms (2.0.0-3) unstable; urgency=medium
* Ship the dynamically generated cmake files to the -dev package.
* Improve the build system patch to state that we prefer libboost shared
objects.
* debian/rules: Packaging (debian/*.install files) now uses the material
that has been installed with make install DESTDIR=debian/build after
cmake call with -DCMAKE_INSTALL_PREFIX=/usr.
2016-01-14 - Filippo Rusconi <lopippo@debian.org>
openms (2.0.0-2) unstable; urgency=medium
* Ship the code examples to the openms-doc package. These examples are
partially described in the documentation (html format) but having the
whole code files is more interesting.
* d/control: add "Replaces: libopenms-1.11" to fix upgrade problem
(Closes: #810356), thanks to Andreas Beckmann <anbe@debian.org> for
the report.
* Bump-up debian/compat to 9.
* debian/watch: use sf redirector.
2015-08-17 - Filippo Rusconi <lopippo@debian.org>
openms (2.0.0-1) unstable; urgency=medium
* New upstream version (Closes: #790624 ; Closes: #804496).
2014-08-18 - Filippo Rusconi <lopippo@debian.org>
openms (1.11.1-5) unstable; urgency=medium
* mv upstream upstream/metadata

See Also

Package Description
openms-doc_2.4.0-real-1_all.deb package for LC/MS data management and analysis - documentation
openms_2.4.0-real-1_all.deb package for LC/MS data management and analysis
openmsx-catapult_0.15.0-1_i386.deb GUI for openMSX
openmsx-data_0.15.0-2_all.deb datafiles for openMSX, an MSX emulator
openmsx-debugger_0.1~git20170806-1_i386.deb Graphical debugger for openMSX
openmsx_0.15.0-2_i386.deb MSX emulator that aims for perfection
openmx-data_3.8.5+dfsg1-1_all.deb package for nano-scale material simulations (data)
openmx_3.8.5+dfsg1-1_i386.deb package for nano-scale material simulations
openni-doc_1.5.4.0+dfsg-2_all.deb developer documentation for OpenNI frameworks
openni-utils_1.5.4.0+dfsg-2_i386.deb debug and test utilities OpenNI framework
openni2-doc_2.2.0.33+dfsg-11_all.deb developer documentation for OpenNI frameworks
openni2-utils_2.2.0.33+dfsg-11_i386.deb debug and test utilities OpenNI2 framework
openntpd_6.2p3-4_i386.deb OpenBSD NTP daemon
openobex-apps_1.7.2-1_i386.deb Applications for OpenOBEX
openocd_0.10.0-5_i386.deb Open on-chip JTAG debug solution for ARM and MIPS systems
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