nanook_1.33+dfsg-1_all.deb


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Description

nanook - pre- and post-alignment analysis of nanopore sequencing data

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename nanook_1.33+dfsg-1_all.deb
Package name nanook
Package version 1.33+dfsg
Package release 1
Package architecture all
Package type deb
Category science
Homepage https://documentation.tgac.ac.uk/display/NANOOK/NanoOK
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 187.52 KB
Installed size 283.00 KB
NanoOK is a flexible, multi-reference software for pre- and post-
alignment analysis of nanopore sequencing data, quality and error
profiles.
NanoOK (pronounced na-nook) is a tool for extraction, alignment and
analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ
files, align them (with a choice of alignment tools), then generate a
comprehensive multi-page PDF report containing yield, accuracy and
quality analysis. Along the way, it generates plain text files which can
be used for further analysis, as well as graphs suitable for inclusion
in presentations and papers.

Alternatives

Package Version Architecture Repository
nanook_1.33+dfsg-1_all.deb 1.33+dfsg all Debian Main
nanook - - -

Requires

Name Value
default-jre-headless -
hdf5-tools -
last-align -
libcommons-io-java -
r-cran-ggplot2 -
r-cran-gridextra -
r-cran-reshape -
r-cran-scales -
texlive-latex-base -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package nanook_1.33+dfsg-1_all.deb
Source Package nanook

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install nanook deb package:
    # sudo apt-get install nanook

Files

Path
/usr/bin/nanook
/usr/share/doc/nanook/changelog.Debian.gz
/usr/share/doc/nanook/copyright
/usr/share/java/nanook-1.33+dfsg.jar
/usr/share/java/nanook.jar
/usr/share/man/man1/nanook.1.gz
/usr/share/nanook/bin/get_contig_stats.pl
/usr/share/nanook/bin/nanook
/usr/share/nanook/bin/nanook_get_read_stats.pl
/usr/share/nanook/bin/nanook_get_tracking.pl
/usr/share/nanook/bin/nanook_plot_comparison.R
/usr/share/nanook/bin/nanook_plot_comparison_reference.R
/usr/share/nanook/bin/nanook_plot_lengths.R
/usr/share/nanook/bin/nanook_plot_reference.R
/usr/share/nanook/bin/nanook_split_reads.pl
/usr/share/nanook/bin/slurmit

Changelog

2018-09-19 - Andreas Tille <tille@debian.org>
nanook (1.33+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
2017-11-16 - Andreas Tille <tille@debian.org>
nanook (1.26+dfsg-1) unstable; urgency=medium
* Initial release (Closes: #873983)

See Also

Package Description
nas-bin_1.9.4-6_i386.deb Network Audio System - client binaries
nas-doc_1.9.4-6_all.deb Network Audio System - extra documentation
nas_1.9.4-6_i386.deb Network Audio System - local server
nasm_2.14-1_i386.deb General-purpose x86 assembler
naspro-bridges_0.5.1-2_i386.deb collection of bridges to LV2
nast-ier_20101212+dfsg1-2_i386.deb NAST-based DNA alignment tool
nast_0.2.0-7+b1_i386.deb packet sniffer and lan analyzer
nasty_0.6-3_i386.deb tool which helps you to recover your GPG passphrase
nat-rtsp-dkms_0.7+4.18-0.1_all.deb Connection tracking and NAT support for RTSP
nat-traverse_0.7-1_all.deb NAT gateway traversal utility
natbraille-doc_2.0rc3-8_all.deb Documentation for natbraille
natbraille_2.0rc3-8_all.deb French braille typesetting program
natlog_2.01.01-1_i386.deb Source-natting firewall logging utility
natpmp-utils_20150609-7_all.deb transitional package
natpmpc_20150609-7_i386.deb portable and fully compliant implementation of NAT-PMP (client)
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