mustang_3.2.3-3_i386.deb


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Description

mustang - multiple structural alignment of proteins

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename mustang_3.2.3-3_i386.deb
Package name mustang
Package version 3.2.3
Package release 3
Package architecture i386
Package type deb
Category biology::peptidic field::biology field::biology:bioinformatics implemented-in::c++ interface::commandline role::program science use::analysing use::comparing works-with-format::plaintext
Homepage http://lcb.infotech.monash.edu.au/mustang/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 104.19 KB
Installed size 371.00 KB
Mustang is an algorithm to align multiple protein structures.
Given a set of PDB files, the program uses the spatial
information in the Calpha atoms of the set to produce a sequence alignment.
Based on a progressive pairwise heuristic the algorithm then proceeds
through a number of refinement passes. Mustang reports the multiple
sequence alignment and the corresponding superposition of structures.

Alternatives

Package Version Architecture Repository
mustang_3.2.3-3_amd64.deb 3.2.3 amd64 Debian Main
mustang - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:3.0
libstdc++6 >= 5

Download

Type URL
Mirror ftp.br.debian.org
Binary Package mustang_3.2.3-3_i386.deb
Source Package mustang

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mustang deb package:
    # sudo apt-get install mustang

Files

Path
/usr/bin/mustang
/usr/share/doc/mustang/README.test
/usr/share/doc/mustang/changelog.Debian.gz
/usr/share/doc/mustang/copyright
/usr/share/doc/mustang/run-unit-test
/usr/share/doc/mustang/examples/1sp1.pdb
/usr/share/doc/mustang/examples/1sp2.pdb
/usr/share/doc/mustang/examples/3znf.pdb
/usr/share/doc/mustang/examples/test_zf-CCHH-small
/usr/share/man/man1/mustang.1.gz

Changelog

2018-04-09 - Andreas Tille <tille@debian.org>
mustang (3.2.3-3) unstable; urgency=medium
[ Helmut Grohne ]
* use standard variable for the c++ compiler
Closes: #895299
[ Andreas Tille ]
* Standards-Version: 4.1.4
* Point Vcs URLs to Salsa
* debhelper 11
2017-11-16 - Andreas Tille <tille@debian.org>
mustang (3.2.3-2) unstable; urgency=medium
* Moved packaging from SVN to Git
* Standards-Version: 4.1.1
2017-01-05 - Andreas Tille <tille@debian.org>
mustang (3.2.3-1) unstable; urgency=medium
* New upstream version
* New homepage
* New watch location
2016-12-06 - Andreas Tille <tille@debian.org>
mustang (3.2.2-2) unstable; urgency=medium
* Homepage with code vanished - use the publication page as next best URL
to link to
* Create fake watch file indicating that there is no upstream site any more
* cme fix dpkg-control
* debhelper 10
* DEP5 fixes
* hardening=+all
2014-08-13 - Andreas Tille <tille@debian.org>
mustang (3.2.2-1) unstable; urgency=medium
* New upstream version
* Fixed watch file
* moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* debian/patches/hardening.patch: Propagate hardening options
* Add some test data manually since we can not download anything
at build time (autopkgtest time)
* Add autopkgtest
2012-04-22 - Andreas Tille <tille@debian.org>
mustang (3.2.1-3) unstable; urgency=low
* debian/upstream:
- Use BibTeX friendly formating of authors
* debian/patches/gcc-4.7.patch: Fix build issue with gcc-4.7
Closes: #667293
2012-04-03 - Andreas Tille <tille@debian.org>
mustang (3.2.1-2) unstable; urgency=low
[ Charles Plessy ]
* Documented information in ‘debian/upstream’.
* Removed mention of the bibliographic reference in ‘debian/control’.
[ Andreas Tille ]
* debian/watch: Fixed homepage for download
* debian/upstream: Moved DOI+PMID to references
* debian/citation.bib: Removed because duplication of information
* debian/mustang.docs: Removed because nothing to install any more
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs fields
- FIxed homepage
* debian/source/format: 3.0 (quilt)
* debian/{control,rules}: removed explicite quilt dependency
* debian/README.source: Removed because outdated with source format
3.0 (quilt)
* debian/copyright: Rewritten to match DEP5 and verified using
cme fix dpkg-copyright
* debian/{compat,control}: debhelper 9
2009-10-28 - Andreas Tille <tille@debian.org>
mustang (3.2.1-1) unstable; urgency=low
* New upstream version
* Morten Kjeldgaard lost interest in this package because of
agressive upstream so I removed him from uploaders and added myself
* debhelper 7
* prefer single debhelper files in debian/ instead of using
arguments do debhelper scripts in the rules file which simplifies
transition to short rules file
* debian/watch: no uversionmangle which leads to wrong version
number
2009-10-05 - Morten Kjeldgaard <mok0@ubuntu.com>
mustang (3.2.0-1) unstable; urgency=low
* New upstream version.
* Patches 02-main.cpp.patch and 04-gcc-4.3-exit.patch have been 
incorporated upstream and are no longer required.
2008-12-14 - Morten Kjeldgaard <mok0@ubuntu.com>
mustang (3.0-2) unstable; urgency=low
* Converted to quilt patch system.
* New uploader email
* Added citation.bib file, installed in /usr/share/doc/mustang

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mwaw2epub_0.9.6-2_i386.deb old Mac formats to EPUB converter
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