mrbayes-mpi_3.2.6+dfsg-2+b1_i386.deb


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Description

mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename mrbayes-mpi_3.2.6+dfsg-2+b1_i386.deb
Package name mrbayes-mpi
Package version 3.2.6+dfsg
Package release 2+b1
Package architecture i386
Package type deb
Category science
Homepage http://mrbayes.csit.fsu.edu/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 583.89 KB
Installed size 1.72 MB
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
This package offers a binary compiled for parallel computation with MPI.

Alternatives

Package Version Architecture Repository
mrbayes-mpi_3.2.6+dfsg-2+b1_amd64.deb 3.2.6+dfsg amd64 Debian Main
mrbayes-mpi - - -

Requires

Name Value
libc6 >= 2.7
libhmsbeagle1v5 -
libopenmpi3 -
libreadline7 >= 6.0
mpi-default-bin -
ssh -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package mrbayes-mpi_3.2.6+dfsg-2+b1_i386.deb
Source Package mrbayes

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mrbayes-mpi deb package:
    # sudo apt-get install mrbayes-mpi

Files

Path
/usr/bin/mb-mpi
/usr/lib/mrbayes-mpi/mb-mpi
/usr/share/doc/mrbayes-mpi/README.Debian
/usr/share/doc/mrbayes-mpi/changelog.Debian.gz
/usr/share/doc/mrbayes-mpi/changelog.Debian.i386.gz
/usr/share/doc/mrbayes-mpi/copyright
/usr/share/man/man1/mb-mpi.1.gz

Changelog

2017-07-19 - Nadiya Sitdykova <rovenskasa@gmail.com>
mrbayes (3.2.6+dfsg-2) unstable; urgency=medium
* Team upload.
[ Nadiya Sitdykova ]
* Add autopkgtest test-suite 
* Add tests for mb-mpi
* Add missing ssh dependency for mb-mpi
[ Steffen Moeller ]
* [debian/upstream/metadata] added refs to registries
[ Andreas Tille ]
* cme fix dpkg-control
2015-12-30 - Andreas Tille <tille@debian.org>
mrbayes (3.2.6+dfsg-1) unstable; urgency=medium
* Moved to Git
* New upstream version
* Remove manual debug package which will now be created automatically
2015-09-05 - Andreas Tille <tille@debian.org>
mrbayes (3.2.5+dfsg-2) unstable; urgency=medium
* Avoid hardcoded shared library dependency
Closes: #798070
2015-06-29 - Andreas Tille <tille@debian.org>
mrbayes (3.2.5+dfsg-1) unstable; urgency=medium
* New upstream version
* Restore old get-orig-source script that works again now
2014-10-25 - Andreas Tille <tille@debian.org>
mrbayes (3.2.3+dfsg-1) unstable; urgency=medium
* New upstream version
* d/rules
- use xz in get-orig-source target
- drop redundant xz compression for binary package
* Adapt get-orig-source script
* cme fix dpkg-control
2014-01-13 - Andreas Tille <tille@debian.org>
mrbayes (3.2.2+dfsg-1) unstable; urgency=medium
* New upstream version
* debian/control:
- cme fix dpkg-control
Remark: Pre-Depends: dpkg (>= 1.15.6~) can definitely be dropped
since even oldstable has a later dpkg.  Most probably a very old
lintian was used in the check for the previous version
- Canoncial Vcs fields
- mrbayes-dbg: s/Conflicts/Breaks/
- Build-Depends: libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2)
since libhmsbeagle-dev (= 2.1-1) is lacking the unversioned header dir
* debian/patches/ldlibs.patch: Make sure we are properly linking against
all libs
* debian/rules: deactivate dh_auto_install since it tries to move files
to /usr/local/bin
* debian/README.source: removed since redundant
2012-08-10 - Tim Booth <tbooth@ceh.ac.uk>
mrbayes (3.2.1+dfsg-2ubuntu1) precise; urgency=low
* Rebuild for Ubuntu.  Fix Lintian warning about xz
2012-08-10 - Andreas Tille <tille@debian.org>
mrbayes (3.2.1+dfsg-2) unstable; urgency=low
[ Andreas Tille ]
* debian/upstream: Add publication data
* debian/patches/as-needed.patch: Enable building using --as-needed
thanks for the patch to Ilya Barygin <randomaction@ubuntu.com>
Closes: #678175
* debian/control: Dropped quilt from Build-Depends
* debhelper 9 (control+compat)
* debian/rules: use xz compression
[ Charles Plessy ]
* debian/control: corrected a typo (Closes: #671666).
2012-04-03 - Andreas Tille <tille@debian.org>
mrbayes (3.2.1+dfsg-1) unstable; urgency=low
* New upstream version
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs fields
* debian/control: Fixed DEP5 issues and verified using
cme fix dpkg-copyright
2012-01-21 - Andreas Tille <tille@debian.org>
mrbayes (3.2.0+dfsg-1) unstable; urgency=low
* New upstream version uploaded to Debian
* debian/patches: removed because applied upstream
* debian/control:
- ehanced description of mrbayes-dbg
- added doc package featuring the provided manual
* debian/watch: call debian/get-orig-source to fetch sources
for PDF documentation
* debian/get-orig-source: Create new tarball including source
for PDF documentation.
* debian/rules:
- get-orig-source target
- prevent dh_compress from compressing docs
* debian/mrbayes-doc.install: install documentation
* debian/mrbayes-doc.doc-base

See Also

Package Description
mrbayes_3.2.6+dfsg-2+b1_i386.deb Bayesian Inference of Phylogeny
mrboom_4.7-1_i386.deb 8 player Bomberman
mrd6_0.9.6-13+b1_i386.deb IPv6 Multicast Routing Daemon
mrename_1.2-13_all.deb tool for easy and automatic renaming of many files
mriconvert_2.1.0-3_i386.deb medical image file conversion utility
mricron-data_0.20140804.1~dfsg.1-3_all.deb data files for MRIcron
mricron-doc_0.20140804.1~dfsg.1-3_all.deb data files for MRIcron
mricron_0.20140804.1~dfsg.1-3_i386.deb magnetic resonance image conversion, viewing and analysis
mrmpi-doc_1.0~20140404-2_all.deb Implements MapReduce operation on top of standard MPI message - doc
mrpt-apps_1.5.6-1+b1_i386.deb Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-common_1.5.6-1_all.deb Mobile Robot Programming Toolkit - Example datasets and files
mrpt-doc_1.5.6-1_all.deb Mobile Robot Programming Toolkit - Documentation and examples
mrrescue_1.02e-1_all.deb Mr Rescue is an arcade 2d action game
mrs_6.0.5+dfsg-7+b2_i386.deb Information Retrieval System for Biomedical databanks
mrtdreader_0.1.6-3_i386.deb Reader for machine-readable travel documents (MRTDs / passports)
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