mptp_0.2.4-1_i386.deb


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Description

mptp - single-locus species delimitation

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename mptp_0.2.4-1_i386.deb
Package name mptp
Package version 0.2.4
Package release 1
Package architecture i386
Package type deb
Category science
Homepage https://github.com/Pas-Kapli/mptp
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 62.93 KB
Installed size 166.00 KB
Implementation of a fast species delimitation method, based on PTP
(Zhang et al. 2013) with a 64-bit multi-threaded design that handles
very large datasets.
The tool mPTP can handle very large biodiversity datasets. It implements
a fast method to compute the ML delimitation from an inferred
phylogenetic tree of the samples. Using MCMC, it also computes the
support values for each clade, which can be used to assess the
confidence of the ML delimitation.
ML delimitation mPTP implements two flavours of the point-estimate
solution. First, it implements the original method from (Zhang et al.
2013) where all within-species processes are modelled with a single
exponential distribution. mPTP uses a dynamic programming implementation
which estimates the ML delimitation faster and more accurately than the
original PTP. The dynamic programming implementation has similar
properties as (Gulek et al. 2010). See the wiki for more information.
The second method assumes a distinct exponential distribution for the
branching events of each of the delimited species allowing it to fit to
a wider range of empirical datasets.
MCMC method mPTP generates support values for each clades. They
represent the ratio of the number of samples for which a particular node
was in the between-species process, to the total number of samples.

Alternatives

Package Version Architecture Repository
mptp_0.2.4-1_amd64.deb 0.2.4 amd64 Debian Main
mptp - - -

Requires

Name Value
libc6 >= 2.8
libgsl23 -
libgslcblas0 -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package mptp_0.2.4-1_i386.deb
Source Package mptp

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mptp deb package:
    # sudo apt-get install mptp

Files

Path
/usr/bin/mptp
/usr/share/bash-completion/completions/mptp
/usr/share/doc/mptp/README.md.gz
/usr/share/doc/mptp/changelog.Debian.gz
/usr/share/doc/mptp/changelog.gz
/usr/share/doc/mptp/copyright
/usr/share/man/man1/mptp.1.gz

Changelog

2018-05-29 - Andreas Tille <tille@debian.org>
mptp (0.2.4-1) unstable; urgency=medium
* New upstream version
2018-04-27 - Andreas Tille <tille@debian.org>
mptp (0.2.3-1) unstable; urgency=medium
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* debhelper 11
2017-08-05 - Andreas Tille <tille@debian.org>
mptp (0.2.2-2) unstable; urgency=medium
* Do not try parallel builds since makefile is not properly generated
(see bug #541713)
Closes: #870783
* Disable -mtune=native
Closes: #870784
* Standards-Version: 4.0.0 (no changes needed)
2017-03-16 - Andreas Tille <tille@debian.org>
mptp (0.2.2-1) unstable; urgency=medium
* Initial release (Closes: #857874)

See Also

Package Description
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mrb_0.3_all.deb Manage incremental data snapshots with make/rsync
mrbayes-doc_3.2.6+dfsg-2_all.deb Bayesian Inference of Phylogeny - manual
mrbayes-mpi_3.2.6+dfsg-2+b1_i386.deb Bayesian Inference of Phylogeny - mpi version
mrbayes_3.2.6+dfsg-2+b1_i386.deb Bayesian Inference of Phylogeny
mrboom_4.7-1_i386.deb 8 player Bomberman
mrd6_0.9.6-13+b1_i386.deb IPv6 Multicast Routing Daemon
mrename_1.2-13_all.deb tool for easy and automatic renaming of many files
mriconvert_2.1.0-3_i386.deb medical image file conversion utility
mricron-data_0.20140804.1~dfsg.1-3_all.deb data files for MRIcron
mricron-doc_0.20140804.1~dfsg.1-3_all.deb data files for MRIcron
mricron_0.20140804.1~dfsg.1-3_i386.deb magnetic resonance image conversion, viewing and analysis
mrmpi-doc_1.0~20140404-2_all.deb Implements MapReduce operation on top of standard MPI message - doc
mrpt-apps_1.5.6-1+b1_i386.deb Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-common_1.5.6-1_all.deb Mobile Robot Programming Toolkit - Example datasets and files
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