miniasm_0.3+dfsg-1_i386.deb


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Description

miniasm - ultrafast de novo assembler for long noisy DNA sequencing reads

Property Value
Distribution Debian 10 (Buster)
Repository Debian Main i386
Package filename miniasm_0.3+dfsg-1_i386.deb
Package name miniasm
Package version 0.3+dfsg
Package release 1
Package architecture i386
Package type deb
Category biology::nucleic-acids field::biology field::biology:bioinformatics implemented-in::c interface::commandline role::program science science::calculation use::calculating use::comparing works-with::biological-sequence
Homepage https://github.com/lh3/miniasm
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 31.96 KB
Installed size 74.00 KB
Miniasm is an experimental very fast OLC-based de novo assembler for noisy
long reads. It takes all-vs-all read self-mappings (typically by minimap)
as input and outputs an assembly graph in the GFA format. Different from
mainstream assemblers, miniasm does not have a consensus step. It simply
concatenates pieces of read sequences to generate the final unitig sequences.
Thus the per-base error rate is similar to the raw input reads.

Alternatives

Package Version Architecture Repository
miniasm_0.3+dfsg-1_amd64.deb 0.3+dfsg amd64 Debian Main
miniasm - - -

Requires

Name Value
libc6 >= 2.4
zlib1g >= 1:1.1.4

Download

Type URL
Mirror ftp.br.debian.org
Binary Package miniasm_0.3+dfsg-1_i386.deb
Source Package miniasm

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install miniasm deb package:
    # sudo apt-get install miniasm

Files

Path
/usr/bin/miniasm
/usr/share/doc/miniasm/changelog.Debian.gz
/usr/share/doc/miniasm/copyright
/usr/share/man/man1/miniasm.1.gz

Changelog

2018-07-24 - Andreas Tille <tille@debian.org>
miniasm (0.3+dfsg-1) unstable; urgency=medium
* Team upload
* New upstream version
2018-07-15 - Andreas Tille <tille@debian.org>
miniasm (0.2+dfsg-3) unstable; urgency=medium
* Team upload.
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* Drop unneeded Testsuite: autopkgtest
2016-08-08 - Sascha Steinbiss <satta@debian.org>
miniasm (0.2+dfsg-2) unstable; urgency=medium
* Change maintainer email.
* Add EDAM annotations.
* Bump Standards-Version.
* Add bindnow hardening.
2016-01-26 - Sascha Steinbiss <sascha@steinbiss.name>
miniasm (0.2+dfsg-1) unstable; urgency=medium
* Remove upstream manuscript draft from source.
* Add missing copyright holders.
2016-01-24 - Sascha Steinbiss <sascha@steinbiss.name>
miniasm (0.2-1) unstable; urgency=low
* Initial packaging (Closes: #812426)

See Also

Package Description
minica_1.0-1+b13_i386.deb super micro binary to issue new CAs
minicom_2.7.1-1+b1_i386.deb Friendly menu driven serial communication program
minicoredumper-utils_2.0.1-1_i386.deb minicoredumper utilities
minicoredumper_2.0.1-1_i386.deb generate minimal and customized core dump files on Linux
minidisc-utils_0.9.16-2_i386.deb Command line utilities for MiniDisc access
minidjvu_0.8.svn.2010.05.06+dfsg-6_i386.deb Monochrome DjVu multipage encoder, single page encoder/decoder
minidlna_1.2.1+dfsg-1+b1_i386.deb lightweight DLNA/UPnP-AV server targeted at embedded systems
minify_2.3.8-1+b10_i386.deb CLI implementation of the Go minify library package
minilzip_1.11-3_i386.deb minified, lossless data compressor based on the LZMA algorithm
minimap2_2.15+dfsg-1_i386.deb versatile pairwise aligner for genomic and spliced nucleotide sequences
minimap_0.2-4_i386.deb tool for approximate mapping of long biosequences such as DNA reads
minimodem_0.24-1+b1_i386.deb general-purpose software audio FSK modem
mininet_2.2.2-4_i386.deb process-based network emulator
minisapserver_0.3.6-1.1+b3_i386.deb Mini SAP Server
minisat+_1.0-4_i386.deb solver for pseudo-Boolean constraints
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